Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 VALIDATION STUDY TO VERIFY DIAGNOSTIC MARKERS FOR LUNG CANCER IN ENDOBRONCHIAL LINING FLUID (GSE27553) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2011-02-28 Homo sapiens
Homo sapiens		 23,569,504
(210,442 x 112) 		18 8 2 84 by_platform
by_series
2 EARLY DETECTION OF LUNG CANCER BY MOLECULAR MARKERS IN ENDOBRONCHIAL LINING FLUID (GSE27554) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2011-02-28 Homo sapiens
Homo sapiens		 23,569,504
(210,442 x 112) 		18 8 2 84 by_platform
by_series
3 Non-small Cell Lung Cancer (qRT-PCR) (GSE10939) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2008-03-25 Homo sapiens
Homo sapiens		 22,096,410
(210,442 x 105) 		105 by_platform
by_series
4 Gene expression differences between matched tumor and normal samples of NSCLC patients (qRT-PCR) (GSE10937) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2008-03-25 Homo sapiens
Homo sapiens		 18,939,780
(210,442 x 90) 		90 by_platform
by_series
5 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm (GSE9106) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) Applied Biosystems 2007-09-19 Homo sapiens
Homo sapiens		 17,466,686
(210,442 x 83) 		83 by_platform
by_series
6 Gene expression differences between adenocarcinoma and squamous cell carcinoma in human NSCLC (qRT-PCR) (GSE10936) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2008-03-25 Homo sapiens
Homo sapiens		 11,784,752
(210,442 x 56) 		56 by_platform
by_series
7 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR (GSE4214) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) Applied Biosystems 2006-02-08 Homo sapiens
Homo sapiens		 3,367,072
(210,442 x 16) 		4 4 4 4 by_platform
by_series
8 Pro-inflammatory rat macrophage mediators (GSE21326) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (rat) (GPL2847) Karolinska Institutet 2010-04-13 Rattus norvegicus
Rattus norvegicus		 2,407,648
(150,478 x 16) 		16 by_platform
by_series
9 Miscellaneous unmatched samples (GSE36495) [RT-PCR] Applied Biosystems TaqMan Gene Expression Assays (human) (GPL2845) German Cancer Research Center and National Center of Tumor Diseases 2012-03-14 Homo sapiens
Homo sapiens		 841,768
(210,442 x 4) 		4 by_platform
by_series
10 Immune-stimulated Peyer's patch (GSE1970) [RT-PCR] PorkChip 2,600 cDNA array (GPL1624) University of Minnesota 2004-11-12 Sus scrofa
Sus scrofa domestica		 110,592
(12,288 x 9) 		9 by_platform
by_series
11 jejunal Peyer’s patch (JPP) gene expression relative to jejunal mesenteric lymph node (j-MLN) gene expression. (GSE1913) [RT-PCR] PorkChip 2,600 cDNA array (GPL1624) University of Minneosta 2004-11-02 Sus scrofa
Sus scrofa domestica		 73,728
(12,288 x 6) 		6 by_platform
by_series
12 Redefining the Relevance of Established Cancer Cell Lines to the Study of Clinical Anti-Cancer Drug Resistance (GSE30034) [RT-PCR] TaqMan qRT-PCR Homo sapiens Low-Density Array 380 (GPL13728) University of Namur 2011-06-16 Homo sapiens
Homo sapiens		 71,820
(380 x 189) 		15 68 20 18 21 2 9 8 28 by_platform
by_series
13 microRNA expression levels in human primary fibroblasts (GSE24610) [RT-PCR] Applied Biosystems TaqMan human microRNA_Array v1.0 early access (GPL11038) mount sinai school of medicine 2010-10-11 Homo sapiens
Homo sapiens		 65,700
(365 x 180) 		180 by_platform
by_series
14 miR-122 as a Regulator of Mitochondrial Metabolic Gene Network in Hepatocellular Carcinoma (GSE22058) [RT-PCR] Rosetta human miRNA qPCR array (GPL10457) Sirna Therapeutics 2010-05-30 Homo sapiens
Homo sapiens		 42,240
(220 x 192) 		192 by_platform
by_series
15 Multidrug Resistance-Linked Gene Signature Predicts Overall Survival of Patients with Primary Ovarian Serous Carcinoma (GSE30009) [RT-PCR] TaqMan qRT-PCR Homo sapiens Low-Density Array 380 (GPL13728) University of Namur 2011-06-15 Homo sapiens
Homo sapiens		 39,140
(380 x 103) 		103 by_platform
by_series
16 MicroRNAs characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia (GSE23024) [RT-PCR] Applied Biosystems TaqMan MicroRNA Array (v 1.0, Early Access) (GPL10708) Erasmus MC-Sophia Children's Hospital 2010-07-20 Homo sapiens
Homo sapiens		 35,770
(365 x 98) 		98 by_platform
by_series
17 MicroRNA profiling in colorectal cancer highlights miR-1 involvement in MET-dependent proliferation (GSE28364) [RT-PCR] TaqMan(r) Array Human MicroRNA A Cards v2.0 (GPL13328) Fondazione Istituto FIRC di Oncologia Molecolare 2011-04-04 Homo sapiens
Homo sapiens		 30,720
(384 x 80) 		80 by_platform
by_series
18 MicroRNA profiling in colorectal cancer highlights miR-1 involvement in MET-dependent proliferation (GSE28364) [RT-PCR] TaqMan(r) Array Human MicroRNA B Cards v2.0 (GPL13329) Fondazione Istituto FIRC di Oncologia Molecolare 2011-04-04 Homo sapiens
Homo sapiens		 29,568
(384 x 77) 		77 by_platform
by_series
19 Transcriptional profiling of intracellular F. tularensis Type A and Type B strains following infection of human monocyte derived macrophage (hMDM). (GSE25603) [RT-PCR] Francisella tularensis full genome qRT-PCR (GPL10974) J Craig Venter Institute 2010-11-24 Francisella tularensis
Francisella tularensis		 26,700
(1,068 x 25) 		25 by_platform
by_series
20 Full genome qRT PCR of Staphylococcus aureus strains USA300 and TB15 during infection of 5 organs (GSE24701) [RT-PCR] PFGRC Staphylococcus_aureus_full_genome_RT-PCR (GPL10963) J Craig Venter Institute 2010-10-14 Staphylococcus aureus
Staphylococcus aureus		 26,470
(2,647 x 10) 		2 2 2 2 2 by_platform
by_series
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