Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL2845 Applied Biosystems TaqMan Gene Expression Assays (human) 210,442 Life Technologies 2005-09-13 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (human), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of human genes.
2 GPL2850 Applied Biosystems TaqMan Gene Expression Assays (mouse) 175,755 Life Technologies 2005-09-15 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (mouse), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of mouse genes.
3 GPL2847 Applied Biosystems TaqMan Gene Expression Assays (rat) 150,478 Life Technologies 2005-09-14 Applied Biosystems Rattus norvegicus
Rattus norvegicus		 RT-PCR RT-PCR, Applied Biosystems TaqMan Gene Expression Assays (rat), Pre-designed TaqMan probe and primer sets for quantitative gene expression studies of rat genes.
4 GPL1624 PorkChip 2,600 cDNA array 12,288 University of Minneosta 2004-10-29 Sus scrofa
Sus scrofa domestica		 RT-PCR spotted DNA/cDNA, PorkChip 2,600 cDNA array, Spotted cDNA array on glass. This set includes approximately 2,600 cDNA clones, selected from a Peyer’s patch subtracted library and other sources. The PorkChip2 cDNA microarray contains 2,423 ESTs from the subtracted jejunal Peyer’s patch library (UMNMPM3), 10 ESTs from the normal jejunal Peyer’s patch library (UMNMPM1), and 26 ESTs from the immune-stimulated jejunal Peyer’s patch library (UMNMPM2), which were cloned using the GeneTrapper cDNA Positive Selection System and pCMVSport6 vector (Invitrogen Corporation, Carlsbad, CA) (2). Each array also contains 86 ESTs identified by differential display RT-PCR (DD-RT-PCR) of PRRSV-infected macrophages (Library: PRRSV DD-RT-PCR)(5), 19 ESTs identified by DD-RT-PCR of influenza-infected porcine epithelial PK-15 cells (Library: UMNMPM4), 40 porcine genes, which were the result of directed cloning efforts (Library: Sus scrofa gene), and 7 porcine reproductive and respiratory syndrome virus strain VR-2332 sequences (Library: PRRSV) positive and negative controls (Library: Control). Positive controls included 8 Ambion ArrayControl sequences. The plasmid inserts were amplified by two rounds of nested PCR using vector-specific primers. The products from the second round PCR were cleaned by the Montage PCR(96) kit (Millipore, Billerica, MA) and were run on 0.8% agarose gels to quantify the amount of DNA by comparison to standards run on each gel. The dried PCR products were resuspended in phosphate buffer (150 mM sodium phosphate and 1 mM EDTA (pH 8.5)) at a final concentration of 100-300 ng/microliter and transferred to 384 well plates. A BioRobotics MicroGrid II (BioRobotics Ltd., Haslingfield, Cambridge, UK) arrayed the DNA on slides coated with poly-L-lysine (Sigma, St. Louis, MO)(3). Elements were arranged in 48 subarrays of 16 X 16, for a total of 12,288 spots per microarray, with each clone represented in by 4 spots. The slides were baked for 15 min at 80 C, UV irradiated (65 mJ), and chemically blocked with 1-methyl-2-pyrrolidinone and succinic anhydride (4) and were stored at room temperature under vacuum until use. The quality of each printing run was verified by staining one slide with SYBR Gold (Molecular Probes, Eugene, OR) and scanning at 488/530 nm (Excitation/ Emission) (1). Platform_references: 1. Battaglia C, Salani G, Consolandi C, Bernardi LR, and De Bellis G. Analysis of DNA microarrays by non-destructive fluorescent staining using SYBR green II. Biotechniques 29: 78-81, 2000. 2. Dvorak CMT, Hyland KA, Machado JG, Zhang Y, Fahrenkrug SC, and Murtaugh MP. Gene discovery and expression profiling in porcine Peyer's patch. Vet Immunol Immunopathol, submitted, 2004. 3. Eisen MB and Brown O. DNA arrays for analysis of gene expression. Methods Enzymol 303: 179-205, 1999. 4. Shalon D, Smith SJ, and Brown PO. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6: 639-645, 1996. 5. Zhang X, Shin J, Molitor TW, Schook LB, and Rutherford MS. Molecular responses of macrophages to porcine reproductive and respiratory syndrome virus infection. Virology 262: 152-162, 1999. Keywords = small intestine, cDNA, pig
5 GPL10963 PFGRC Staphylococcus_aureus_full_genome_RT-PCR 2,647 J Craig Venter Institute 2010-09-23 Staphylococcus aureus
Staphylococcus aureus		 RT-PCR RT-PCR, PFGRC Staphylococcus_aureus_full_genome_RT-PCR, Full genome Staphylococcus aureus qRT-PCR
6 GPL14610 Wafergen Biosystems SmartChip Human Oncology Panel v2 1,239 Cornell University 2011-09-22 Wafergen Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Wafergen Biosystems SmartChip Human Oncology Panel v2, SYBR Green qPCR assay
7 GPL10974 Francisella tularensis full genome qRT-PCR 1,068 J Craig Venter Institute 2010-09-24 Francisella tularensis
Francisella tularensis		 RT-PCR RT-PCR, Francisella tularensis full genome qRT-PCR, Francisella tularensis full genome qRT-PCR
8 GPL4097 TaqMan Human MAQC (TAQ) 1,044 NCTR/FDA 2006-08-15 Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan Human MAQC (TAQ),
9 GPL15373 Applied Biological Materials human miRNA (AMB C201) 1,034 The University of British Columbia 2012-03-22 Applied Biological Materials Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biological Materials human miRNA (AMB C201), PCR-based miRNA profiling assay
10 GPL11665 Mouse Immunology 384 StellARrayâ„¢ qPCR Array plates (# 00188202) 778 Imperial College London 2011-01-27 Lonza/Bar Harbor Biotechnology Mus musculus
Mus musculus		 RT-PCR RT-PCR, Mouse Immunology 384 StellARrayâ„¢ qPCR Array plates (# 00188202), This GEO Platform record represents two different plates, one custom made by Bar Harbor labs and another commercially available. This is designated by the 'plate' column in the Platform table below.
11 GPL11199 Applied Biosystems Mouse Taqman miRNA Expression Assays A and B 768 Mayo Clinic 2010-11-11 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, Applied Biosystems Mouse Taqman miRNA Expression Assays A and B, Cards A and B.
12 GPL11316 Applied Biosystems Human Taqman MicroRNA Array v3.0 768 Johns Hopkins University School of Medicine 2010-12-14 Applied Biosystems by Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems Human Taqman MicroRNA Array v3.0, qRT-PCR TaqMan Low-Density Array
13 GPL14907 SA Biosciences Human Genome V2.0 miRNA PCR Arrays: MAH-3200 (MAH-3100 & MAH-3101) 768 University of Pittsburgh 2011-11-21 SA Biosciences - A Qiagen Company Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, SA Biosciences Human Genome V2.0 miRNA PCR Arrays: MAH-3200 (MAH-3100 & MAH-3101),
14 GPL15466 TaqMan® Rodent MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Mus musculus
Mus musculus		 RT-PCR RT-PCR, TaqMan® Rodent MicroRNA Array v3.0 A/B, PCR assay
15 GPL15467 TaqMan® Human MicroRNA Array v3.0 A/B 768 Renji Hospital, JiaoTong University School of Medicine 2012-04-19 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, TaqMan® Human MicroRNA Array v3.0 A/B, PCR assay
16 GPL15695 Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M 768 Cancer Hospital, Fudan University 2012-06-14 Exiqon Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Exiqon microRNA Ready-to-Use PCR, Human panel I+II, V2.M, miRCURY LNAâ„¢ Universal RT microRNA PCR, 4x Human panel I and 4x Human panel II in 384well PCR plates. One reaction each of 742 human microRNAs and 6 reference genes. For use with ABI 7900HT and other instruments.
17 GPL16618 SABiosciences Human miRNome miRNA PCR Array [MAH-3200G] 768 Instituto Mexicano del Seguro Social 2013-02-12 SABiosciences Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, SABiosciences Human miRNome miRNA PCR Array [MAH-3200G], PCR assay RT2 miRNA PCR Array: Human Genome V2.0 Complete (384-well)_Plates 1 & 2 Catalog Number: MAH-3200G SABiosciences Human Pediatric Astrocytomes IMSS
18 GPL16850 Applied Biosystems TaqMan Array Human MicroRNA A+B Cards Set v3.0 768 The Chinese University of Hong Kong 2013-03-20 Applied Biosystems, Life Technologies Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems TaqMan Array Human MicroRNA A+B Cards Set v3.0, PCR assay
19 GPL15497 Applied Biosystems TaqMan Array Human MicroRNA Cards (A+B Card Set v3) 762 Universitätsklinikum Jena 2012-04-27 Applied Biosystems Homo sapiens
Homo sapiens		 RT-PCR RT-PCR, Applied Biosystems TaqMan Array Human MicroRNA Cards (A+B Card Set v3), The TaqMan® Array Human MicroRNA Card Set v3.0 is a two card set containing a total of 384 TaqMan® MicroRNA Assays per card
20 GPL4473 GUELPH Bovine immune-endocrine microarray 720 University of Guelph 2006-10-22 Immunogenetics lab, Department of Pathobiology, Universitu of Guelph Bos taurus
Bos taurus		 RT-PCR spotted DNA/cDNA, GUELPH Bovine immune-endocrine microarray, The in-house microarray consists of 167 RT-PCR derived DNA fragments representing 167 ORFs from bovine. The DNA fragments are printed 4 times on the surface of the microarray (four-replicate blocks). The 167 immune and endocrine genes grouped into the following categories: cytokine genes, chemoattractants or chemokines and their respective receptor genes, immune regulatory genes, T-cell associated genes, pattern recognition or innate host defense genes, immunglobin (Ig) or Ig-related genes, complement genes, antigen processing or presenting genes, and genes encoding endocrine hormones or their receptors. As positive controls, the array includes 5 “housekeeping” genes (GAPDH, HPRT, PRL19, β-actin, β2-microglobulin), negative controls consisted of a Rhodococcus equi 17kD virulence protein gene, plasmid pACYC177 DNA, and a thaliana photosystem I chlorophyll a/b-binding protein gene, and the FcRgII gene intron. The printing controls included serially diluted bovine genomic DNA, and printing buffer only.
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