Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(0)
  endo/exo-crine
(210)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(1)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM308558 Super-SAGE Data from ppi2-1 mutant leaves (Wassilewskija) 43,580 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf ppi2-1 mutant (Wassilewskija) leaves
2 GSM308557 Super-SAGE Data from wild type leaves (Wassilewskija) 29,238 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf Wild type (Wassilewskija) leaves
3 GSM8941 PtaedaCrownXylem 27,398 University of Georgia 2003-08-08 [SAGE NlaIII] SAGE:10:NlaIII:Pinus taeda (GPL385) SAGE Pinus taeda
Pinus taeda
other adult aerial structure Xylem
4 GSM8940 PtaedaBaseXylem 25,984 University of Georgia 2003-08-08 [SAGE NlaIII] SAGE:10:NlaIII:Pinus taeda (GPL385) SAGE Pinus taeda
Pinus taeda
other adult aerial structure Xylem
5 GSM322154 Triticum aestivum cv Scorpion 25 Normal rep 1 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
6 GSM322155 Triticum aestivum cv Scorpion 25 Normal rep 2 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
7 GSM322156 Triticum aestivum cv Scorpion 25 Hot/Dry 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
8 GSM322157 Triticum aestivum cv Xi19 Normal rep 1 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
9 GSM322158 Triticum aestivum cv Xi19 Normal rep 2 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
10 GSM322159 Triticum aestivum cv Xi19 Hot Dry 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
11 GSM34285 OSJNGg 57,668 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) SAGE Oryza sativa Japonica Group
Oryza sativa Japonica Group
leaf 21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare
12 GSM34284 OSJNGf 36,034 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) SAGE Oryza sativa Japonica Group
Oryza sativa Japonica Group
leaf 21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare
13 GSM34282 OSJNGb 31,025 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) SAGE Oryza sativa Japonica Group
Oryza sativa Japonica Group
leaf 21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare
14 GSM34283 OSJNGd 28,081 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) SAGE Oryza sativa Japonica Group
Oryza sativa Japonica Group
leaf 21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare
15 GSM298187 0 Hours Resistant 2,738,110 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf mock inoculated leaves
16 GSM298189 12 Hours Resistant 1,607,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 12 hpi leaves
17 GSM298188 0 Hours Susceptible 1,355,986 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf mock inoculated leaves
18 GSM298192 72 Hours Susceptible 1,244,455 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 72 hpi leaves
19 GSM298191 72 Hours Resistant 1,158,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 72 hpi leaves
20 GSM298190 12 Hours Susceptible 1,099,531 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 12 hpi leaves