Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(26,879)
  Primates
(96)
  Rodents
(7,393)
  Mammals
(308)
  Vertebrates
(642)
  Invertebrates
(2,089)
  Plants
(4,686)
  Bacteria
(1,408)
  Viruses
(26)
  Phages
(0)
  Unclassified
(147)
  All
(43,688)
 
  SAGE NlaIII
(52)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(14)
  GeneChip
(19,397)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(6,992)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(2)
  RT-PCR
(182)
  HT-Seq
(0)
  Other
(48)
  All
(43,688)
 
  brain
(5)
  blood
(24)
  connective
(0)
  reproductive
(5)
  muscular
(1)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(1)
  adult aerial structure
(6)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(7)
  unclassified
(3)
  all
(52)
 
1   |   2   |   3      »      
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM211666 CD4_T-cell_clone_activated_LongSAGE 152,600 University of Oxford 2007-07-19 [SAGE NlaIII] SAGE:21:NlaIII:Homo sapiens (GPL5624) SAGE Homo sapiens
Homo sapiens
lymphnode human CD4+ T Cell clone 29
2 GSM5436 fetal testis somatic cells 42,046 University of Glasgow Veterinary School 2003-04-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
testis testes from Wv/Wv mice
3 GSM322154 Triticum aestivum cv Scorpion 25 Normal rep 1 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
4 GSM322155 Triticum aestivum cv Scorpion 25 Normal rep 2 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
5 GSM322156 Triticum aestivum cv Scorpion 25 Hot/Dry 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
6 GSM322157 Triticum aestivum cv Xi19 Normal rep 1 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
7 GSM322158 Triticum aestivum cv Xi19 Normal rep 2 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
8 GSM322159 Triticum aestivum cv Xi19 Hot Dry 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
9 GSM194388 SAGE_rat_P0_VMP 26,935 MRC Human Reproductive Sciences Unit 2007-05-25 [SAGE NlaIII] SAGE:17:NlaIII:Rattus norvegicus (GPL5330) SAGE Rattus norvegicus
Rattus norvegicus
unclassified source_name:rat female P0 microdissected ventral mesenchymal pad title:SAGE_rat_P0_VMP description:Library prepared using freshly isolated rat VMP tissue - 90 VMPs
10 GSM30721 granulosa cells, PMSG-treated 26,251 University of Glasgow Veterinary School 2004-09-16 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
unclassified source_name:granulosa cells title:granulosa cells, PMSG-treated description:granulosa cells isolated from immature mice (18-22days) treated 48h earlier with 5IU PMSG
11 GSM194389 SAGE_rat_P0_VSU 23,267 MRC Human Reproductive Sciences Unit 2007-05-25 [SAGE NlaIII] SAGE:17:NlaIII:Rattus norvegicus (GPL5330) SAGE Rattus norvegicus
Rattus norvegicus
muscle rat female P0 microdissected urethra, comprising VMP, Smooth muscle and Urethra
12 GSM5435 Adult testis - somatic cells 22,840 University of Glasgow Veterinary School 2003-04-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
testis adult mouse testis
13 GSM160043 Megakaryocyte 19,685 University of Birmingham 2007-02-02 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
peripheral blood Megakaryocyte
14 GSM30722 granulosa cells, PMSG/hCG-treated 19,662 University of Glasgow Veterinary School 2004-09-16 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
unclassified source_name:granulosa cells title:granulosa cells, PMSG/hCG-treated description:granulosa cells isolated from immature mice (18-22days) treated with 5IU PMSG followed 48h later with 5IU hCG. Cells were isolated 12h after hCG treatment
15 GSM132451 Mouse bone marrow derived dendritic cells LPS matured - LongSAGE 17,900 University of Oxford 2006-08-29 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
bone marrow Mouse bone marrow derived dendritic cells LPS matured (CBA/Ca and Balbc mixed library)
16 GSM3679 Treg clone Tr1D1 culture 16,419 University of Oxford 2003-01-15 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
lymphnode CD4+ Tr1-like clone H-Y specific (resting)
17 GSM105765 NCP 16,052 Newcastle University 2006-04-17 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
cerebrum In vitro differentiated neural crest progeny
18 GSM48353 Bovine granulosa cells from cohort follicles 15,661 University of Glasgow 2005-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus
Bos taurus
ovary Granulosa cells harvested from largest cohort follicles growing in the first follicle wave of the estrous cycle. Follicles were dissected from ovaries following slaughter of 4 Holstein cows at 1.3 days after wave emergence. Total RNA extracted from granulosa cells of the 4 follicles was pooled for generation of the SAGE library. Keywords = Bovine Reproduction Keywords = Ovary Keywords = dominant follicle selection Keywords = Granulosa cell
19 GSM105766 EPI-NCSC 15,190 Newcastle University 2006-04-17 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
pooled Epidermal neural crest stem cells
20 GSM3831 ES derived DCs (LPS treated) 14,656 University of Oxford 2003-02-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
lymphnode Dendritic cells derived from ESF 116 stem cell line treated with LPS
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