Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(21,397)
  Primates
(80)
  Rodents
(9,352)
  Mammals
(342)
  Vertebrates
(534)
  Invertebrates
(726)
  Plants
(6,411)
  Bacteria
(1,450)
  Viruses
(9)
  Phages
(0)
  Unclassified
(109)
  All
(40,410)
 
  SAGE NlaIII
(28)
  SAGE RsaI
(3)
  SAGE Sau3A
(0)
  MPSS
(129)
  GeneChip
(16,174)
  Tiling Array
(1,407)
  cDNA Array
(3,164)
  Oligo Array
(18,094)
  Bead Array
(887)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(60)
  HT-Seq
(436)
  Other
(15)
  All
(40,410)
 
  brain
(0)
  blood
(12)
  connective
(0)
  reproductive
(3)
  muscular
(0)
  digestive
(5)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(2)
  embryo
(0)
  adult aerial structure
(2)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(4)
  unclassified
(0)
  all
(28)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM308558 Super-SAGE Data from ppi2-1 mutant leaves (Wassilewskija) 43,580 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf ppi2-1 mutant (Wassilewskija) leaves
2 GSM119465 Bombyx ovary SAGE library #1 40,311 The University of Tokyo 2006-07-10 [SAGE NlaIII] SAGE:16:NlaIII:Bombyx mori (GPL3984) SAGE Bombyx mori
Bombyx mori
ovary ovary (stage1-stage3)
3 GSM308557 Super-SAGE Data from wild type leaves (Wassilewskija) 29,238 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf Wild type (Wassilewskija) leaves
4 GSM136123 Human Immature Dendritic Cells 17,896 The University of Tokyo 2006-09-14 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood monocyte-derived immature dendritic cells
5 GSM136198 Human CD8 T cells 17,280 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
lymphnode Human CD8+ T cells
6 GSM136194 Human Naive CD4 T Cells 17,213 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
lymphnode CD45RA+ CD4 T cells
7 GSM119467 Bombyx ovary SAGE library #2 16,740 The University of Tokyo 2006-07-10 [SAGE NlaIII] SAGE:16:NlaIII:Bombyx mori (GPL3984) SAGE Bombyx mori
Bombyx mori
ovary ovary (stage2-3)
8 GSM136199 Human B cells 16,318 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
lymphnode Human CD19+ B cells
9 GSM8867 SAGE_Hiroshima_GC_W226T 16,082 Hiroshima University Graduate School of Biomedical Sciences 2003-08-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
stomach primary gastric cancer tissue
10 GSM136121 Human GM-CSF-macrophages SAGE 15,880 The University of Tokyo 2006-09-14 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood GM-CSF-induced macrophages
11 GSM136120 Human M-CSF-macrophages SAGE 15,759 The University of Tokyo 2006-09-14 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood M-CSF-induced macrophages
12 GSM118371 Human monocyte 14,869 The University of Tokyo 2006-07-04 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood CD14+ monocytes isolated from human peripheral blood
13 GSM7800 SAGE_Hiroshima_GC_S219T 14,576 Hiroshima University Graduate School of Biomedical Sciences 2003-07-10 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
stomach primary gastric cancer tissue
14 GSM136196 Human activated Th2 Cells 13,870 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood Cord blood-derived Th2 cells
15 GSM29040 injured LSEC 13,407 University of Tokyo 2004-08-17 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
pooled C57BL/6J mouse liver sinusoidal endothelial cells
16 GSM29039 normal LSEC 13,038 University of Tokyo 2004-08-17 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
pooled C57BL/6J mouse liver sinusoidal endothelial cells
17 GSM8505 SAGE_Hiroshima_GC_W246T 12,792 Hiroshima University Graduate School of Biomedical Sciences 2003-07-18 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
stomach primary gastric cancer tissue
18 GSM136195 Human activated Th1 Cells 12,150 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood Cord blood-derived Th1
19 GSM136119 Human LPS monocytes 11,702 The University of Tokyo 2006-09-14 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
peripheral blood LPS-stimulated human CD14+ monocytes
20 GSM136197 Human NK Cells 11,287 The University of Tokyo 2006-09-15 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
lymphnode CD56+ NK cells
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