Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)
  Primates
(4,928)
  Rodents
(181,106)
  Mammals
(16,260)
  Vertebrates
(18,263)
  Invertebrates
(37,338)
  Plants
(91,454)
  Bacteria
(39,082)
  Viruses
(1,266)
  Phages
(101)
  Unclassified
(5,242)
  All
(898,944)
 
  SAGE NlaIII
(1,683)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(439)
  GeneChip
(377,145)
  Tiling Array
(21,846)
  cDNA Array
(103,476)
  Oligo Array
(239,584)
  Bead Array
(106,999)
  Protein Array
(5)
  Antibody
(1,152)
  RT-PCR
(3,959)
  HT-Seq
(35,574)
  Other
(6,909)
  All
(898,944)
 
  brain
(348)
  blood
(223)
  connective
(120)
  reproductive
(104)
  muscular
(0)
  digestive
(70)
  liver
(29)
  lung
(108)
  urinary
(0)
  endo/exo-crine
(210)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(95)
  unclassified
(105)
  all
(1,683)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM321790 Roots of the variety ICC588 treated by dehydration for 6 hours 13,899 INRA 2008-09-17 [SAGE NlaIII] SAGE:26:NlaIII:Cicer arietinum (GPL7318) SAGE Cicer arietinum
Cicer arietinum
root chickpea roots of variety ICC588
2 GSM321783 Roots of chickpea plants grown in soil at normal conditions 9,110 INRA 2008-09-17 [SAGE NlaIII] SAGE:26:NlaIII:Cicer arietinum (GPL7318) SAGE Cicer arietinum
Cicer arietinum
root Roots of chickpea plants grown in soil at normal conditions
3 GSM60893 leaf_greenhouse_rep1 5,292 Katholieke Universiteit Leuven 2005-06-14 [SAGE NlaIII] SAGE:22:NlaIII:Musa acuminata (GPL2542) SAGE Musa acuminata
Musa acuminata
leaf youngest_unfurled_leaf_greenhouse
4 GSM308558 Super-SAGE Data from ppi2-1 mutant leaves (Wassilewskija) 43,580 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf ppi2-1 mutant (Wassilewskija) leaves
5 GSM308557 Super-SAGE Data from wild type leaves (Wassilewskija) 29,238 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf Wild type (Wassilewskija) leaves
6 GSM127012 RL-SAGE_MGGW_Vegetative mycelium_Gowda et al., 2004 51,925 The Ohio State University 2006-08-11 [SAGE NlaIII] SAGE:21:NlaIII:Magnaporthe grisea (GPL4085) SAGE Magnaporthe grisea
Magnaporthe grisea
pooled RL-SAGE_MGGW_Vegetative mycelium_Gowda et al., 2004
7 GSM211666 CD4_T-cell_clone_activated_LongSAGE 152,600 University of Oxford 2007-07-19 [SAGE NlaIII] SAGE:21:NlaIII:Homo sapiens (GPL5624) SAGE Homo sapiens
Homo sapiens
lymphnode human CD4+ T Cell clone 29
8 GSM30936 Leaf Transcriptome of Zea mays Using RL-SAGE Method 44,870 Ohio State University 2004-09-21 [SAGE NlaIII] SAGE:17:NlaIII:Zea mays (GPL1462) SAGE Zea mays
Zea mays
leaf 30-day-old leaves
9 GSM207306 Bloodstream form T. b. brucei 427-800 16,601 Andrew McArthur Consulting 2007-07-03 [SAGE NlaIII] SAGE:17:NlaIII:Trypanosoma brucei brucei (GPL5464) SAGE Trypanosoma brucei brucei
Trypanosoma brucei brucei
peripheral blood Bloodstream form of Lister strain 427 Trypanosoma brucei brucei (MiTat 1.2), expressing VSG800
10 GSM207305 Bloodstream form T. b. brucei 427-221 16,477 Andrew McArthur Consulting 2007-07-03 [SAGE NlaIII] SAGE:17:NlaIII:Trypanosoma brucei brucei (GPL5464) SAGE Trypanosoma brucei brucei
Trypanosoma brucei brucei
peripheral blood Bloodstream form of Lister strain 427 Trypanosoma brucei brucei (MiTat 1.2), expressing VSG221
11 GSM125246 LongSAGE_fetal skeletal muscle_Tongcheng pig_33 dpc 25,738 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 33 dpc, Tongcheng pigs.
12 GSM125250 LongSAGE_fetal skeletal muscle_Landrace pig_65 dpc 24,829 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 65 dpc, Landrace pigs
13 GSM125247 LongSAGE_fetal skeletal muscle_Tongcheng pig_65dpc 24,655 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 65 dpc, Tongcheng pigs
14 GSM125249 LongSAGE_fetal skeletal muscle_Landrace pig_33 dpc 24,408 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 33 dpc, Landrace pigs
15 GSM125251 LongSAGE_fetal skeletal muscle_Landrace pig_90 dpc 22,464 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 90 dpc, Landrace pigs
16 GSM125248 LongSAGE_fetal skeletal muscle_Tongcheng pig_90 dpc 22,035 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle fetal skeletal muscle, 90 dpc, Tongcheng pigs
17 GSM140699 large white age 9 month 7,665 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
18 GSM140698 large white age 3 month 5,241 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
19 GSM140696 Dunel (Landrace X Duroc) age 3 month 5,158 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
20 GSM140697 Dunel (Landrace X Duroc) age 9 month 4,437 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
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