Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,032)		   Primates
(191)		   Rodents
(8,356)		   Mammals
(1,530)		   Vertebrates
(561)		   Invertebrates
(895)		   Plants
(4,458)		   Bacteria
(2,513)		   Viruses
(10)		   Phages
(0)		   Unclassified
(167)		   All
(46,739)		  
  SAGE NlaIII
(19)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(52)		   GeneChip
(20,869)		   Tiling Array
(668)		   cDNA Array
(7,192)		   Oligo Array
(11,933)		   Bead Array
(4,565)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(324)		   HT-Seq
(1,028)		   Other
(89)		   All
(46,739)		  
  brain
(10)		   blood
(2)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(2)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(2)		   pooled
(0)		   unclassified
(3)		   all
(19)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM26978 LongSAGE of mouse tails 41,714 GSF - National Research Center for Environment and Health 2004-07-15 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus		 embryo microdissected embryonic mouse tails
2 GSM31733 busage 24,064 GSF-National Reseearch Center 2004-10-04 [SAGE NlaIII] SAGE:17:NlaIII:Gallus gallus (GPL1477) SAGE Gallus gallus
Gallus gallus		 lymphnode This library represents total RNA from bursal tissue of 20 day old CB-inbred chicks This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration' Library constructed in the laboratory of Jean-Marie Buerstedde, M.D. submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line Organ: bursa of Fabricius Lab host: E. coli Vector: pZErO-1 Vector type: plasmid Library treatment: non-normalized Keywords = chicken transcriptome SAGE Bursal cell DT40 Lot batch =
3 GSM31734 dt40sage 21,308 GSF-National Reseearch Center 2004-10-04 [SAGE NlaIII] SAGE:17:NlaIII:Gallus gallus (GPL1477) SAGE Gallus gallus
Gallus gallus		 lymphnode This library represents total RNA from DT40 Cre1 cells This work was supported by the EU grants 'Genetics in a cell line' and 'Mechanisms of gene integration' Library constructed in the laboratory of Jean-Marie Buerstedde, M.D. submitted for publication with the title: Evaluation of the chicken transcriptome by SAGE of B cell and the DT40 cell line Organ: bursa of Fabricius Lab host: E. coli Vector: pZErO-1 Vector type: plasmid Library treatment: non-normalized Keywords = chicken transcriptome SAGE Bursal cell DT40 Lot batch =
4 GSM357872 Seed_23DAP 24,654 Justus Liebig University 2009-01-07 [SAGE NlaIII] SAGE:17:NlaIII:Brassica napus (GPL8033) SAGE Brassica napus
Brassica napus		 other seed/fruit/grain Seed_23DAP
5 GSM357873 Seed_35DAP 12,713 Justus Liebig University 2009-01-07 [SAGE NlaIII] SAGE:17:NlaIII:Brassica napus (GPL8033) SAGE Brassica napus
Brassica napus		 other seed/fruit/grain Seed_35DAP
6 GSM230144 PSA-NCAM-positive neuronal precursor cells from adult mouse brain 16,180 Miltenyi Biotec GmbH 2007-09-18 [SAGE NlaIII] SAGE:11:NlaIII:Mus musculus (GPL5885) SAGE Mus musculus
Mus musculus		 cerebrum PSA-NCAM-positive neuronal precursor cells from the adult subventricular zone
7 GSM230131 Bruce-4 embryonic stem cells (undifferentiated) 10,896 Miltenyi Biotec GmbH 2007-09-18 [SAGE NlaIII] SAGE:11:NlaIII:Mus musculus (GPL5885) SAGE Mus musculus
Mus musculus		 embryo Bruce-4 embryonic stem cells
8 GSM24492 Rat - Superior Olivary Complex (SOC) 10,473 University of Kaiserslautern 2004-06-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 unclassified source_name:superior olivary complex title:Rat - Superior Olivary Complex (SOC) description:SAGE profile of the rat superior olivary complex with linker sequences removed. Rats were 60 days old (P60). Keywords = superior olivary complex Keywords = SOC
9 GSM2575 ATDC5 undifferentiated 10,282 GSF - National Research Center for Environment and Health 2002-11-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 unclassified source_name:ATDC5 cells title:ATDC5 undifferentiated description:SAGE library made from undifferentiated ATDC5 cells at confluence
10 GSM2576 ATDC5, BMP4 induced 10,102 GSF - National Research Center for Environment and Health 2002-11-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 unclassified source_name:ATDC5 cells title:ATDC5, BMP4 induced description:SAGE library made from BMP4-induced ATDC5 cells
11 GSM112797 Neuroblastoma_primary_stage4S_NB11 13,932 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4S
12 GSM112807 Neuroblastoma_primary_stage4S_NB1 13,501 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4S
13 GSM112808 Neuroblastoma_primary_stage4S_NB2 13,235 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4S
14 GSM112813 Neuroblastoma_primary_stage4_NB12 12,942 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4
15 GSM112795 Neuroblastoma_primary_stage4S_NB10 12,473 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4S
16 GSM112812 Neuroblastoma_primary_stage4_NB9 12,385 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4
17 GSM112809 Neuroblastoma_primary_stage4S_NB5 11,918 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4S
18 GSM112810 Neuroblastoma_primary_stage4_NB7 10,767 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, primary tumor, stage 4
19 GSM112814 Neuroblastoma_CL_IMR5 4,034 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 cerebrum Neuroblastoma, cell line, IMR-5
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