Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

All
(931,947)

SAGE NlaIII
(1,683)

SAGE RsaI
(3)

SAGE Sau3A
(54)

MPSS
(439)

GeneChip
(391,468)

Tiling Array
(22,222)

cDNA Array
(104,397)

Oligo Array
(247,270)

adult aerial structure
(23)

young aerial structure
(1)

root
(8)

meristem/growing tissue
(7)

flower/sexual organ
(3)

seed/fruit/grain
(3)

pooled
(95)

unclassified
(105)

all
(1,683)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM30936	Leaf Transcriptome of Zea mays Using RL-SAGE Method	44,870	Ohio State University	2004-09-21	[SAGE NlaIII] SAGE:17:NlaIII:Zea mays (GPL1462)	SAGE	Zea mays	leaf	30-day-old leaves
2	GSM23443	ZMR Sage	14,850	University of Illinois	2004-05-20	[SAGE NlaIII] SAGE:10:NlaIII:Zea mays (GPL1244)	SAGE	Zea mays	meristem/growing tissue	Root tip well watered
3	GSM207306	Bloodstream form T. b. brucei 427-800	16,601	Andrew McArthur Consulting	2007-07-03	[SAGE NlaIII] SAGE:17:NlaIII:Trypanosoma brucei brucei (GPL5464)	SAGE	Trypanosoma brucei brucei	peripheral blood	Bloodstream form of Lister strain 427 Trypanosoma brucei brucei (MiTat 1.2), expressing VSG800
4	GSM207305	Bloodstream form T. b. brucei 427-221	16,477	Andrew McArthur Consulting	2007-07-03	[SAGE NlaIII] SAGE:17:NlaIII:Trypanosoma brucei brucei (GPL5464)	SAGE	Trypanosoma brucei brucei	peripheral blood	Bloodstream form of Lister strain 427 Trypanosoma brucei brucei (MiTat 1.2), expressing VSG221
5	GSM322154	Triticum aestivum cv Scorpion 25 Normal rep 1	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
6	GSM322155	Triticum aestivum cv Scorpion 25 Normal rep 2	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
7	GSM322156	Triticum aestivum cv Scorpion 25 Hot/Dry	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
8	GSM322157	Triticum aestivum cv Xi19 Normal rep 1	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
9	GSM322158	Triticum aestivum cv Xi19 Normal rep 2	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
10	GSM322159	Triticum aestivum cv Xi19 Hot Dry	39,040	University of Bristol	2008-09-18	[SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079)	SAGE	Triticum aestivum	other adult aerial structure	Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
11	GSM261506	Porcine alveolar macrophages infected with PRRSV VR-2332 (24 hours)	35,369	National Animal Disease Center	2008-01-31	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	peripheral blood	Porcine alveolar macrophages infected with PRRSV (24 hours)
12	GSM261504	Porcine alveolar macrophages infected with PRRSV VR-2332 (12 hours)	32,682	National Animal Disease Center	2008-01-31	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	peripheral blood	Porcine alveolar macrophages infected with PRRSV (12 hours)
13	GSM261505	Porcine alveolar macrphages infected with PRRSV VR-2332 (16 hours)	31,918	National Animal Disease Center	2008-01-31	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	lung	Porcine alveolar macrphages infected with PRRSV (16 hours)
14	GSM261503	Porcine alveolar macrophages infected with PRRSV VR-2332 (6 hours)	29,519	National Animal Disease Center	2008-01-31	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	peripheral blood	Porcine alveolar macrophages infected with PRRSV (6 hours)
15	GSM125246	LongSAGE_fetal skeletal muscle_Tongcheng pig_33 dpc	25,738	Chinese Academy of Agricultural Sciences	2006-08-06	[SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061)	SAGE	Sus scrofa	muscle	fetal skeletal muscle, 33 dpc, Tongcheng pigs.
16	GSM125250	LongSAGE_fetal skeletal muscle_Landrace pig_65 dpc	24,829	Chinese Academy of Agricultural Sciences	2006-08-06	[SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061)	SAGE	Sus scrofa	muscle	fetal skeletal muscle, 65 dpc, Landrace pigs
17	GSM125247	LongSAGE_fetal skeletal muscle_Tongcheng pig_65dpc	24,655	Chinese Academy of Agricultural Sciences	2006-08-06	[SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061)	SAGE	Sus scrofa	muscle	fetal skeletal muscle, 65 dpc, Tongcheng pigs
18	GSM125249	LongSAGE_fetal skeletal muscle_Landrace pig_33 dpc	24,408	Chinese Academy of Agricultural Sciences	2006-08-06	[SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061)	SAGE	Sus scrofa	muscle	fetal skeletal muscle, 33 dpc, Landrace pigs
19	GSM261502	Normal porcine alveolar macrophages	24,355	National Animal Disease Center	2008-01-31	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	peripheral blood	Normal porcine alveolar macrophages
20	GSM129478	Day 6 in vitro-produced porcine blastocysts	23,453	USDA-ARS	2006-08-21	[SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270)	SAGE	Sus scrofa	embryo	Porcine Blastocysts (In vitro-produced)

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