Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(348)		   blood
(223)		   connective
(120)		   reproductive
(104)		   muscular
(67)		   digestive
(70)		   liver
(29)		   lung
(108)		   urinary
(44)		   endo/exo-crine
(210)		   embryo
(115)		   adult aerial structure
(23)		   young aerial structure
(1)		   root
(8)		   meristem/growing tissue
(7)		   flower/sexual organ
(3)		   seed/fruit/grain
(3)		   pooled
(95)		   unclassified
(105)		   all
(1,683)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM143121 Vero cell line transformed by A fragment of genome of infectious bursal disease virus 10,160 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops		 unclassified source_name:vero cell,A fragment of genome of infectious bursal disease virus title:Vero cell line transformed by A fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
2 GSM143058 Vero cell infected by infectious bursal disease virus 9,186 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops		 unclassified source_name:vero cell,infectious bursal disease virus title:Vero cell infected by infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
3 GSM143123 Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus 8,840 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops		 unclassified source_name:vero cell,the 243 fragment of genome of infectious bursal disease virus title:Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
4 GSM143101 Vero cell 8,369 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops		 unclassified source_name:vero cell title:Vero cell description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
5 GSM143110 Vero cell line transformed by vp5 gene of infectious bursal disease virus 7,130 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops		 unclassified source_name:vero cell,vp5 gene of infectious bursal disease virus title:Vero cell line transformed by vp5 gene of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
6 GSM1514 PC3 AS2 20,661 Yale University School of Medicine 2002-03-26 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 prostate PC3
7 GSM1515 PC3 Mock 15,961 Yale University School of Medicine 2002-03-26 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 prostate PC3
8 GSM535670 Aureococcus anophagefferens, Control (nutrient replete growing cells) 17,895 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens replete growing cells harvested mid-exponential phase of growth title:Aureococcus anophagefferens, Control (nutrient replete growing cells) description:n/a
9 GSM535675 Aureococcus anophagefferens, -N (nitrogen deficient cells) 14,958 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens nitrogen-deficient cells harvested at onset of staitionary phase of growth title:Aureococcus anophagefferens, -N (nitrogen deficient cells) description:n/a
10 GSM535671 Aureococcus anophagefferens, -P (phosphorus deficient cells) 12,830 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens phosphorus-deficient cells harvested at onset of stationary phase title:Aureococcus anophagefferens, -P (phosphorus deficient cells) description:N/A
11 GSM3839 SAGEHISL1 7,663 Washington University School of Medicine 2003-02-05 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 pancreas pancreatic islets
12 GSM3840 SAGEHR96R 5,637 Washington University School of Medicine 2003-02-05 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 pancreas hand-selected pancreatic islet
13 GSM3838 SAGEHEXO1 5,496 Washington University School of Medicine 2003-02-05 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 pancreas exocrine pancreas
14 GSM37337 PBEC_unstimulated 15,053 Vrije Universiteit Medisch Centrum 2004-12-08 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 lung primary bronchial epithelial cells
15 GSM37339 PBEC_IL1beta/TNFalpha 12,475 Vrije Universiteit Medisch Centrum 2004-12-08 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 lung primary bronchial epithelial cells
16 GSM37341 PBEC_PAO1 10,259 Vrije Universiteit Medisch Centrum 2004-12-08 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 lung primary bronchial epithelial cells
17 GSM60839 SAGE_Drosophila pseudoobscura_Male 7,672 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura		 unclassified source_name:male flies title:SAGE_Drosophila pseudoobscura_Male description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
18 GSM60840 SAGE_Drosophila pseudoobscura_Female 7,486 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura		 unclassified source_name:female flies title:SAGE_Drosophila pseudoobscura_Female description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
19 GSM172849 PCCl3_iodide_24h_1 11,478 USP - University of Sao Paulo 2007-03-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 thyroid/parathyroid rat thyroid cell PCC3_iodide treated_24h
20 GSM172848 PCCl3_24h_1 9,963 USP - University of Sao Paulo 2007-03-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 thyroid/parathyroid PCCl3 thyroid follicular cell, 24h
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