Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(6,761)
  Primates
(4)
  Rodents
(3,703)
  Mammals
(141)
  Vertebrates
(405)
  Invertebrates
(831)
  Plants
(1,401)
  Bacteria
(717)
  Viruses
(12)
  Phages
(0)
  Unclassified
(18)
  All
(13,993)
 
  SAGE NlaIII
(219)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(5)
  GeneChip
(6,761)
  Tiling Array
(226)
  cDNA Array
(3,605)
  Oligo Array
(3,107)
  Bead Array
(64)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(5)
  All
(13,993)
 
  brain
(80)
  blood
(10)
  connective
(6)
  reproductive
(14)
  muscular
(12)
  digestive
(15)
  liver
(6)
  lung
(6)
  urinary
(15)
  endo/exo-crine
(23)
  embryo
(13)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(2)
  unclassified
(17)
  all
(219)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM109148 Grass Shrimp Endosulfan-exposed Library 5,286 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Endosulfan-exposed title:Grass Shrimp Endosulfan-exposed Library description:This library was constructed from Endosulfan-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
2 GSM109146 Grass Shrimp Control Library 4,814 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp control title:Grass Shrimp Control Library description:This library was constructed from control shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
3 GSM109150 Grass Shrimp Cadmium-exposed Library 4,519 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Cadmium-exposed title:Grass Shrimp Cadmium-exposed Library description:This library was constructed from Cadmium-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
4 GSM109147 Grass Shrimp Fipronil-exposed Library 3,189 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Fipronil-exposed title:Grass Shrimp Fipronil-exposed Library description:This library was constructed from Fipronil-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
5 GSM110380 Squamous esophagus long-term primary cell culture 13,816 University Medical Center Utrecht 2006-05-24 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
esophagus Squamous esophagus long-term primary cell culture
6 GSM110378 Barrett long-term primary cell culture 13,521 University Medical Center Utrecht 2006-05-24 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
esophagus SAGE data of long-term primary cell culture derived from metaplastic Barrett's esophagus
7 GSM110379 Esophageal adenocarcinoma 10,794 University Medical Center Utrecht 2006-05-24 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
esophagus Esophageal adenocarcinoma
8 GSM110381 esophageal squamous cell carcinoma 8,636 University Medical Center Utrecht 2006-05-24 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
skin esophageal squamous cell carcinoma
9 GSM112797 Neuroblastoma_primary_stage4S_NB11 13,932 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4S
10 GSM112807 Neuroblastoma_primary_stage4S_NB1 13,501 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4S
11 GSM112808 Neuroblastoma_primary_stage4S_NB2 13,235 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4S
12 GSM112813 Neuroblastoma_primary_stage4_NB12 12,942 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4
13 GSM112795 Neuroblastoma_primary_stage4S_NB10 12,473 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4S
14 GSM112812 Neuroblastoma_primary_stage4_NB9 12,385 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4
15 GSM112809 Neuroblastoma_primary_stage4S_NB5 11,918 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4S
16 GSM112810 Neuroblastoma_primary_stage4_NB7 10,767 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, primary tumor, stage 4
17 GSM112814 Neuroblastoma_CL_IMR5 4,034 University Children's Hospital 2006-06-06 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
cerebrum Neuroblastoma, cell line, IMR-5
18 GSM105765 NCP 16,052 Newcastle University 2006-04-17 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
cerebrum In vitro differentiated neural crest progeny
19 GSM105766 EPI-NCSC 15,190 Newcastle University 2006-04-17 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
pooled Epidermal neural crest stem cells
20 GSM105767 NCSC 13,054 Newcastle University 2006-04-17 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
cerebrum Embryonic neural crest stem cells
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