| 1 |
GSM1128 |
ZR75-1 untreated |
3,991 |
Dana-Farber Cancer Institute |
2002-02-17 |
[SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) |
SAGE |
Homo sapiens
 |
breast |
ZR75-1 human breast cancer cell line |
| 2 |
GSM1130 |
ZR75-1 tamoxifen |
5,017 |
Dana-Farber Cancer Institute |
2002-02-17 |
[SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) |
SAGE |
Homo sapiens
|
breast |
ZR75-1 cell line, tamoxifen treated |
| 3 |
GSM1129 |
ZR75-1 estrogen treated |
4,282 |
Dana-Farber Cancer Institute |
2002-02-17 |
[SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) |
SAGE |
Homo sapiens
|
breast |
ZR75-1 human breast cancer cell line |
| 4 |
GSM23443 |
ZMR Sage |
14,850 |
University of Illinois |
2004-05-20 |
[SAGE NlaIII] SAGE:10:NlaIII:Zea mays (GPL1244) |
SAGE |
Zea mays
 |
meristem/growing tissue |
Root tip well watered |
| 5 |
GSM85229 |
Zebrafish ovarian follicles |
11,399 |
Université Bordeaux |
2005-11-25 |
[SAGE NlaIII] SAGE:10:NlaIII:Danio rerio (GPL3209) |
SAGE |
Danio rerio
 |
ovary |
full-grown ovarian follicles |
| 6 |
GSM160702 |
Yeast_WT_H4ac |
27,959 |
NHLBI, NIH |
2007-02-06 |
[SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) |
genomic |
Saccharomyces cerevisiae
 |
unclassified |
source_name:Yeast_WT_H4ac title:Yeast_WT_H4ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody. |
| 7 |
GSM160701 |
Yeast_WT_H3ac |
28,611 |
NHLBI, NIH |
2007-02-06 |
[SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) |
genomic |
Saccharomyces cerevisiae
|
unclassified |
source_name:Yeast_WT_H3ac title:Yeast_WT_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody. |
| 8 |
GSM160700 |
Yeast_GCN5_H4ac |
27,400 |
NHLBI, NIH |
2007-02-06 |
[SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) |
genomic |
Saccharomyces cerevisiae
|
unclassified |
source_name:Yeast_GCN5_H4ac title:Yeast_GCN5_H4ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody. |
| 9 |
GSM160699 |
Yeast_GCN5_H3ac |
30,242 |
NHLBI, NIH |
2007-02-06 |
[SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) |
genomic |
Saccharomyces cerevisiae
|
unclassified |
source_name:Yeast_GCN5_H3ac title:Yeast_GCN5_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody. |
| 10 |
GSM139481 |
whole brain_chinook_spring |
9,492 |
Hatfield Marine Science Center, Oregon State University |
2006-10-10 |
[SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) |
SAGE |
Oncorhynchus tshawytscha
 |
cerebrum |
whole brain_chinook_spring |
| 11 |
GSM139482 |
whole brain_chinook_ocean |
9,247 |
Hatfield Marine Science Center, Oregon State University |
2006-10-10 |
[SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) |
SAGE |
Oncorhynchus tshawytscha
|
cerebrum |
whole brain_chinook_ocean |
| 12 |
GSM139480 |
whole brain_chinook_fall |
8,054 |
Hatfield Marine Science Center, Oregon State University |
2006-10-10 |
[SAGE NlaIII] SAGE:17:NlaIII:Oncorhynchus tshawytscha (GPL4407) |
SAGE |
Oncorhynchus tshawytscha
|
cerebrum |
whole brain_chinook_fall |
| 13 |
GSM143110 |
Vero cell line transformed by vp5 gene of infectious bursal disease virus |
7,130 |
Zhejiang University |
2006-10-30 |
[SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) |
SAGE |
Chlorocebus aethiops
 |
unclassified |
source_name:vero cell,vp5 gene of infectious bursal disease virus title:Vero cell line transformed by vp5 gene of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03 |
| 14 |
GSM143123 |
Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus |
8,840 |
Zhejiang University |
2006-10-30 |
[SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) |
SAGE |
Chlorocebus aethiops
|
unclassified |
source_name:vero cell,the 243 fragment of genome of infectious bursal disease virus title:Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03 |
| 15 |
GSM143121 |
Vero cell line transformed by A fragment of genome of infectious bursal disease virus |
10,160 |
Zhejiang University |
2006-10-30 |
[SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) |
SAGE |
Chlorocebus aethiops
|
unclassified |
source_name:vero cell,A fragment of genome of infectious bursal disease virus title:Vero cell line transformed by A fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03 |
| 16 |
GSM143058 |
Vero cell infected by infectious bursal disease virus |
9,186 |
Zhejiang University |
2006-10-30 |
[SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) |
SAGE |
Chlorocebus aethiops
|
unclassified |
source_name:vero cell,infectious bursal disease virus title:Vero cell infected by infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03 |
| 17 |
GSM143101 |
Vero cell |
8,369 |
Zhejiang University |
2006-10-30 |
[SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) |
SAGE |
Chlorocebus aethiops
|
unclassified |
source_name:vero cell title:Vero cell description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03 |
| 18 |
GSM458901 |
Vehicle |
31,764 |
British Columbia Cancer Agency |
2009-10-02 |
[SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) |
SAGE |
Homo sapiens
|
unclassified |
source_name:Cell line title:Vehicle description:LongSAGE libraries were constructed with 5ug of total RNA using the Invitrogen I-SAGE Long kit. |
| 19 |
GSM770 |
UV-B treated Arabidopsis thaliana |
4,202 |
Samuel Roberts Noble Foundation |
2001-12-04 |
[SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) |
SAGE |
Arabidopsis thaliana
 |
unclassified |
source_name:Arabidopsis (Col) title:UV-B treated Arabidopsis thaliana description:10-day-old Arabidopsis thaliana (Col) was treated with 8000 J M-2 UV-B. After 24 hr, total RNA was isolated using TRIzol reagent. mRNA was isolated using oligo-dT beads. |
| 20 |
GSM63231 |
Uterus_day 5 of pregnancy_inter-implantation site |
16,964 |
Shantou University |
2005-07-08 |
[SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) |
SAGE |
Mus musculus
 |
uterus |
Uterus, day 5 of pregnancy, inter-implantation site |