Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(44)
  endo/exo-crine
(210)
  embryo
(115)
  adult aerial structure
(23)
  young aerial structure
(1)
  root
(8)
  meristem/growing tissue
(7)
  flower/sexual organ
(3)
  seed/fruit/grain
(3)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM25927 SAGE_CGAP_GY0 Swarm rat chondrosarcoma tibia tumor 43,390 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
bone mRNA Swarm rat chondrosarcoma tibia tumor, tissue line JWS
2 GSM25929 SAGE_CGAP_HR0 Swarm rat chondrosarcoma lung tumor 42,741 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
bone mRAN from Swarm rat chondrosarcoma tumor line
3 GSM25926 SAGE_CGAP_GF0 rat articular cartilage 38,144 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
bone mRAN from rat femoral head cartilage
4 GSM25890 SAGE_CGAP_FM0 rat chondrosarcoma 33,393 University of Iowa 2004-06-21 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
bone mRNA from subcutaneously grown Swarm rat chondrosarcoma, tissue line JWS
5 GSM25928 SAGE_CGAP_HF0 Swarm rat chondrosarcoma 28,557 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
bone mRNA from subcutaneously grown Swarm rat chondrosarcoma tissue line TGO
6 GSM384581 mLSAGE_MEF_normal_CL_SHE18 53,642 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
skin embryonic tissue, fibroblast, normal, cell line, irradiation, long sage
7 GSM137111 SAGE_skin_intact male mice 44,979 Laval University 2006-09-21 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin skin
8 GSM384328 mSAGE_MEF_normal_CL_SHE18 42,877 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin embryonic tissue, fibroblast, normal, cell line, irradiation, extracted short sage
9 GSM137117 SAGE_adipose_tissue intact male mice 38,611 Laval University 2006-09-21 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
adipos adipose tissue
10 GSM106741 mLSAGE_Skin_normal_P84_MMD_SM214 33,146 Canada's Michael Smith Genome Sciences Centre 2006-04-25 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
skin Skin, normal
11 GSM384377 mSAGE_Skin_normal_P84_MMD_SM214 32,725 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin skin, normal, mocroscope dissected, p84, male, extracted short sage
12 GSM384380 mSAGE_Skin_normal_TS24_MMD_SM134 26,446 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin skin, normal, microscope dissected, extracted short sage, ts24, late gestation embryo
13 GSM106680 mLSAGE_Skin_normal_TS24_MMD_SM134 25,608 Canada's Michael Smith Genome Sciences Centre 2006-04-25 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
skin Skin, normal
14 GSM137108 SAGE_bone_intact male mice 25,563 Laval University 2006-09-21 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
bone bone
15 GSM25976 Adipose tissue of GDX + DHT 24h male mice 23,673 Molecular Endocrinology and Oncology Research Center, Laval University Medical Center (CHUL) 2004-06-23 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
adipos Retroperitoneal adipose tissue
16 GSM55 mouse_forelimb 23,140 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
bone E11.5 intact developing B6C3H forelimb buds
17 GSM137103 SAGE_vagina_intact female mice 22,346 Laval University 2006-09-21 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin vagina
18 GSM56 mouse_hindlimb 22,329 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
bone E11.5 intact developing B6C3H hindlimbs
19 GSM384381 mSAGE_Skin_squamous_cell_carcinoma_B_25 22,061 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
skin skin, squamous cell, carcinoma, adult, female, short sage, skh-1, uv radiation
20 GSM113299 mLSAGE_Bone_normal_P84_MMD_SM218 20,358 Canada's Michael Smith Genome Sciences Centre 2006-06-06 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
bone Bone, normal
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