Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(387,571)		   Tiling Array
(22,136)		   cDNA Array
(104,070)		   Oligo Array
(246,081)		   Bead Array
(111,089)		   Protein Array
(5)		   Antibody
(1,156)		   RT-PCR
(4,464)		   HT-Seq
(38,248)		   Other
(7,261)		   All
(924,376)		  
  brain
(348)		   blood
(223)		   connective
(120)		   reproductive
(104)		   muscular
(67)		   digestive
(70)		   liver
(29)		   lung
(108)		   urinary
(44)		   endo/exo-crine
(210)		   embryo
(115)		   adult aerial structure
(23)		   young aerial structure
(1)		   root
(8)		   meristem/growing tissue
(7)		   flower/sexual organ
(3)		   seed/fruit/grain
(3)		   pooled
(95)		   unclassified
(105)		   all
(1,683)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM146210 STAGE tag library for c-myc 83,189 University of Texas at Austin 2006-11-17 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin Cultured HeLa cells
2 GSM25927 SAGE_CGAP_GY0 Swarm rat chondrosarcoma tibia tumor 43,390 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 bone mRNA Swarm rat chondrosarcoma tibia tumor, tissue line JWS
3 GSM25929 SAGE_CGAP_HR0 Swarm rat chondrosarcoma lung tumor 42,741 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 bone mRAN from Swarm rat chondrosarcoma tumor line
4 GSM25926 SAGE_CGAP_GF0 rat articular cartilage 38,144 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 bone mRAN from rat femoral head cartilage
5 GSM25890 SAGE_CGAP_FM0 rat chondrosarcoma 33,393 University of Iowa 2004-06-21 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 bone mRNA from subcutaneously grown Swarm rat chondrosarcoma, tissue line JWS
6 GSM25928 SAGE_CGAP_HF0 Swarm rat chondrosarcoma 28,557 University of Iowa 2004-06-22 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus		 bone mRNA from subcutaneously grown Swarm rat chondrosarcoma tissue line TGO
7 GSM110381 esophageal squamous cell carcinoma 8,636 University Medical Center Utrecht 2006-05-24 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin esophageal squamous cell carcinoma
8 GSM1123 HumanEpidermis_skin 7,652 Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen 2002-02-12 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin Human epidermis (skin)
9 GSM1124 AKUnaffected_Epidermis_skin 6,375 Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen 2002-02-12 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin Unaffected epidermis from AK patient
10 GSM1122 TNF_AlphaCultKC 6,043 Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen 2002-02-12 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin Cultured human epidermal keratinocytes, stimulated with TNF-alpha
11 GSM1121 NormCultKC_Diff 5,836 Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen 2002-02-12 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin Cultured human epidermal keratinocytes
12 GSM1125 AKAffected_Epidermis_skin 5,296 Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Center Nijmegen 2002-02-12 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens		 skin Affected epidermis from AK patient
13 GSM7759 Primary Embryonic Fibroblasts 17,081 National Institute on Aging, NIH 2003-07-07 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 skin Pimary mouse embryonic fibroblasts (derived from ~16.5 dpc fetuses, CD-1 mice)
14 GSM55 mouse_forelimb 23,140 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 bone E11.5 intact developing B6C3H forelimb buds
15 GSM56 mouse_hindlimb 22,329 National Human Genome Research Institute 2001-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus		 bone E11.5 intact developing B6C3H hindlimbs
16 GSM384135 LSAGE_Skin_Normal_B_hs0271 382,357 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, normal, bulk, long sage, slx-sage, solexa sage, male
17 GSM384134 LSAGE_Skin_Melanoma_B_hs0276 378,065 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
18 GSM384127 LSAGE_Skin_Cancer_B_hs0279 356,844 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, basal cell carcinoma
19 GSM384133 LSAGE_Skin_Melanoma_B_hs0275 282,858 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
20 GSM384129 LSAGE_Skin_Cancer_B_hs0283 281,735 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, squamous cell carcinoma
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