Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(44)
  endo/exo-crine
(210)
  embryo
(115)
  adult aerial structure
(23)
  young aerial structure
(1)
  root
(8)
  meristem/growing tissue
(7)
  flower/sexual organ
(3)
  seed/fruit/grain
(3)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM140699 large white age 9 month 7,665 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
2 GSM140698 large white age 3 month 5,241 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
3 GSM140696 Dunel (Landrace X Duroc) age 3 month 5,158 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
4 GSM140697 Dunel (Landrace X Duroc) age 9 month 4,437 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica
muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
5 GSM819 Normal Human Muscle (old) 21,113 University of Rochester 2002-01-29 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle Muscle biopsies
6 GSM824 Normal Human Muscle (young) 21,113 University of Rochester 2002-02-01 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle Muscle biopsies
7 GSM135392 SAGE_skeletal muscle_Detraining training young men 25,983 Penn State College of Medicine 2006-09-07 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle skeletal muscle
8 GSM135389 SAGE skeletal muscle 5 days training young men 24,684 Penn State College of Medicine 2006-09-07 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle skeletal muscle
9 GSM135388 SAGE skeletal muscle pretraining young men 23,343 Penn State College of Medicine 2006-09-07 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle skeletal muscle
10 GSM135390 SAGE skeletal muscle 6 wk training young men 20,933 Penn State College of Medicine 2006-09-07 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle skeletal muscle
11 GSM135391 SAGE skeletal muscle 12 wk training young men 19,570 Penn State College of Medicine 2006-09-07 [SAGE NlaIII] SAGE:10:NlaIII:Homo sapiens (GPL4) SAGE Homo sapiens
Homo sapiens
muscle skeletal muscle
12 GSM1681 Adult mouse heart 23,941 National Institute on Aging, NIH 2002-05-23 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
heart Hearts, 3-month old female C57BL/6 mice
13 GSM15116 Old Mouse Heart 8,314 National Institute on Aging, NIH 2004-01-13 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
heart Heart
14 GSM384582 mLSAGE_Muscle_normal_TS19_MMD_SM042 34,781 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
muscle muscle, skeletal muscle, normal, microscope dissected, late gestation embryo, long sage, ts25
15 GSM384277 mSAGE_Heart_normal_TS19_MMD_SM008 30,709 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
heart heart, atrioventricular canal, normal, microscope dissected, mid-gestation embryo, extracted short sage, ts19, atlas
16 GSM384274 mSAGE_Heart_normal_TS15_MMD_SM007 30,651 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
heart heart, ventricle, normal, microscope dissected, mid-gestation embryo, extracted short sage, ts14, atlas
17 GSM384329 mSAGE_Muscle_normal_TS19_MMD_SM042 30,409 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
muscle muscle, skeletal muscle, normal, microscope dissected, late gestation embryo, extracted short sage, ts25, atlas
18 GSM384548 mLSAGE_Heart_normal_TS9_MMD_SM174 29,297 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) SAGE Mus musculus
Mus musculus
heart heart, normal, microscope dissected, e8.5, ts9, long sage
19 GSM384278 mSAGE_Heart_normal_TS19_MMD_SM051 28,096 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:10:NlaIII:Mus musculus (GPL11) SAGE Mus musculus
Mus musculus
heart heart, ventricle, normal, microscope dissected, extracted short sage, ts19, mid-gestation embryo, atlas
20 GSM384120 LSAGE_Muscle_Rhabdomyosarcoma_B_1 27,380 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens
muscle long sage, muscle, juvenile, male, rhabdomyosarcoma, bulk
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