Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(0)
  endo/exo-crine
(210)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(1)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM696473 Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation 522,888 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Phosphorus limited T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation
2 GSM696988 Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions 469,509 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Nutrient replete T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions
3 GSM245722 6 day sporocysts (conditioned) 20,361 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni 6 day sporocysts, conditioned title:6 day sporocysts (conditioned) description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
4 GSM245721 6 day sporocysts (unconditioned) 19,922 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni 6 day sporocysts, unconditioned title:6 day sporocysts (unconditioned) description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
5 GSM245720 Miracidia 19,349 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni miracidia title:Miracidia description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
6 GSM245724 20 day sporocysts (conditioned) 17,469 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni 20 day sporocysts, conditioned title:20 day sporocysts (conditioned) description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
7 GSM245723 20 day sporocysts (unconditioned) 11,437 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni 20 day sporocysts, unconditioned title:20 day sporocysts (unconditioned) description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
8 GSM207302 Control adults 10,913 Andrew McArthur Consulting 2007-07-03 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni adults, un-exposed title:Control adults description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
9 GSM207303 SNP exposed adults 9,982 Andrew McArthur Consulting 2007-07-03 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni adults, SNP exposed title:SNP exposed adults description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
10 GSM160699 Yeast_GCN5_H3ac 30,242 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast_GCN5_H3ac title:Yeast_GCN5_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
11 GSM160701 Yeast_WT_H3ac 28,611 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast_WT_H3ac title:Yeast_WT_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
12 GSM160702 Yeast_WT_H4ac 27,959 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast_WT_H4ac title:Yeast_WT_H4ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
13 GSM160700 Yeast_GCN5_H4ac 27,400 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MApping Technique) [NlaIII: Saccharomyces cerevisiae] tag list (GPL4813) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast_GCN5_H4ac title:Yeast_GCN5_H4ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
14 GSM255664 Munoz_OP_untreated 7,806 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
15 GSM255665 San Roman_OP_treated 7,714 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
16 GSM255666 San Roman_OP_untreated 6,095 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
17 GSM255662 Munoz_OP_treated 6,030 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
18 GSM194388 SAGE_rat_P0_VMP 26,935 MRC Human Reproductive Sciences Unit 2007-05-25 [SAGE NlaIII] SAGE:17:NlaIII:Rattus norvegicus (GPL5330) SAGE Rattus norvegicus
Rattus norvegicus
unclassified source_name:rat female P0 microdissected ventral mesenchymal pad title:SAGE_rat_P0_VMP description:Library prepared using freshly isolated rat VMP tissue - 90 VMPs
19 GSM24492 Rat - Superior Olivary Complex (SOC) 10,473 University of Kaiserslautern 2004-06-02 [SAGE NlaIII] SAGE:10:NlaIII:Rattus norvegicus (GPL23) SAGE Rattus norvegicus
Rattus norvegicus
unclassified source_name:superior olivary complex title:Rat - Superior Olivary Complex (SOC) description:SAGE profile of the rat superior olivary complex with linker sequences removed. Rats were 60 days old (P60). Keywords = superior olivary complex Keywords = SOC
20 GSM109148 Grass Shrimp Endosulfan-exposed Library 5,286 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Endosulfan-exposed title:Grass Shrimp Endosulfan-exposed Library description:This library was constructed from Endosulfan-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
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