Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(1,697)
  SAGE RsaI
(3)
  SAGE Sau3A
(54)
  MPSS
(507)
  GeneChip
(441,758)
  Tiling Array
(24,730)
  cDNA Array
(109,124)
  Oligo Array
(288,250)
  Bead Array
(148,432)
  Protein Array
(5)
  Antibody
(1,287)
  RT-PCR
(6,509)
  HT-Seq
(64,850)
  Other
(13,899)
  All
(1,101,311)
 
  brain
(348)
  blood
(229)
  connective
(120)
  reproductive
(104)
  muscular
(67)
  digestive
(75)
  liver
(29)
  lung
(108)
  urinary
(44)
  endo/exo-crine
(210)
  embryo
(115)
  adult aerial structure
(23)
  young aerial structure
(1)
  root
(8)
  meristem/growing tissue
(7)
  flower/sexual organ
(3)
  seed/fruit/grain
(3)
  pooled
(95)
  unclassified
(108)
  all
(1,697)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM143121 Vero cell line transformed by A fragment of genome of infectious bursal disease virus 10,160 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops
unclassified source_name:vero cell,A fragment of genome of infectious bursal disease virus title:Vero cell line transformed by A fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
2 GSM143058 Vero cell infected by infectious bursal disease virus 9,186 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops
unclassified source_name:vero cell,infectious bursal disease virus title:Vero cell infected by infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
3 GSM143123 Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus 8,840 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops
unclassified source_name:vero cell,the 243 fragment of genome of infectious bursal disease virus title:Vero cell line transformed by the 243 fragment of genome of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
4 GSM143101 Vero cell 8,369 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops
unclassified source_name:vero cell title:Vero cell description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
5 GSM143110 Vero cell line transformed by vp5 gene of infectious bursal disease virus 7,130 Zhejiang University 2006-10-30 [SAGE NlaIII] SAGE:17:NlaIII:Chlorocebus aethiops (GPL4510) SAGE Chlorocebus aethiops
Chlorocebus aethiops
unclassified source_name:vero cell,vp5 gene of infectious bursal disease virus title:Vero cell line transformed by vp5 gene of infectious bursal disease virus description:as the commercial kit producted by invitrogen company,I-SAGEâ„¢ Long Kit,Catalog no. T5000-03
6 GSM696473 Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation 522,888 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Phosphorus limited T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation
7 GSM696988 Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions 469,509 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Nutrient replete T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions
8 GSM535670 Aureococcus anophagefferens, Control (nutrient replete growing cells) 17,895 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens
unclassified source_name:Aureococcus anophagefferens replete growing cells harvested mid-exponential phase of growth title:Aureococcus anophagefferens, Control (nutrient replete growing cells) description:n/a
9 GSM535675 Aureococcus anophagefferens, -N (nitrogen deficient cells) 14,958 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens
unclassified source_name:Aureococcus anophagefferens nitrogen-deficient cells harvested at onset of staitionary phase of growth title:Aureococcus anophagefferens, -N (nitrogen deficient cells) description:n/a
10 GSM535671 Aureococcus anophagefferens, -P (phosphorus deficient cells) 12,830 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens
unclassified source_name:Aureococcus anophagefferens phosphorus-deficient cells harvested at onset of stationary phase title:Aureococcus anophagefferens, -P (phosphorus deficient cells) description:N/A
11 GSM60839 SAGE_Drosophila pseudoobscura_Male 7,672 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura
unclassified source_name:male flies title:SAGE_Drosophila pseudoobscura_Male description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
12 GSM60840 SAGE_Drosophila pseudoobscura_Female 7,486 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura
unclassified source_name:female flies title:SAGE_Drosophila pseudoobscura_Female description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
13 GSM255664 Munoz_OP_untreated 7,806 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
14 GSM255665 San Roman_OP_treated 7,714 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
15 GSM255666 San Roman_OP_untreated 6,095 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
16 GSM255662 Munoz_OP_treated 6,030 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
17 GSM109148 Grass Shrimp Endosulfan-exposed Library 5,286 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Endosulfan-exposed title:Grass Shrimp Endosulfan-exposed Library description:This library was constructed from Endosulfan-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
18 GSM109146 Grass Shrimp Control Library 4,814 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp control title:Grass Shrimp Control Library description:This library was constructed from control shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
19 GSM109150 Grass Shrimp Cadmium-exposed Library 4,519 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Cadmium-exposed title:Grass Shrimp Cadmium-exposed Library description:This library was constructed from Cadmium-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
20 GSM109147 Grass Shrimp Fipronil-exposed Library 3,189 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemon,unidentified
Palaemon,unidentified
unclassified source_name:Grass shrimp Fipronil-exposed title:Grass Shrimp Fipronil-exposed Library description:This library was constructed from Fipronil-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
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