Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(18)		   blood
(5)		   connective
(2)		   reproductive
(1)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(1)		   urinary
(24)		   endo/exo-crine
(0)		   embryo
(2)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(0)		   all
(54)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM183648 Whole brain 61,509 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse whole brain
2 GSM183639 Cingulate cortex 54,338 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse cingulate cortex
3 GSM183640 Entorhinal cortex 53,354 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse entorhinal cortex
4 GSM134557 ovarian gene expression innthe absence of FIGLA, an oocyte specific transcription factor 47,961 national institutes of health 2006-09-02 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 ovary normal Versus FIGLA null ovary at new born developmental stage
5 GSM183645 Motor cortex 47,515 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse motor cortex
6 GSM183653 Ventral tegmental area 32,397 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse ventral tegmental area
7 GSM183646 Orbital cortex 30,885 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse orbital cortex
8 GSM183652 Substantia nigra 30,394 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse substantia nigra
9 GSM183644 Nucleus accumbens 29,279 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse nucleus accumbens
10 GSM183650 Prelimbic cortex 27,590 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse prelimbic cortex
11 GSM10429 Kidney outer medullary collecting duct. 26,071 CEA Saclay 2003-09-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 kidney microdissected outer medullary collecting ducts
12 GSM183647 Somatosensory cortex 25,416 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse somatosensory cortex
13 GSM183649 Caudate-putamen 25,114 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse caudate-putamen
14 GSM183651 Thalamus 24,402 CEA Saclay 2007-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 cerebrum Wild-type mouse thalamus
15 GSM10428 Kidney cortical collecting duct 22,657 CEA Saclay 2003-09-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 kidney microdissected cortical collecting ducts
16 GSM10391 mpkCCD, Aldosterone 4h 22,344 CEA Saclay 2003-09-22 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 kidney mpkCCD stands for Murine Principal Kidney Cortical Collecting Duct. mpkCCD consists of a clonal cell line that displays some of the properties of native principal collecting duct cells, e.g. responsiveness to aldosterone and vasopressin. The current transcriptome corresponds to mpkCCD cells incubated with 1µM aldosterone for 4 hours. Data are provided after removal of tags derived from linkers sequences Keywords = aldosterone Keywords = cortical collecting duct Keywords = kidney Keywords = SADE
17 GSM10427 Kidney distal convoluted tubule 21,390 CEA Saclay 2003-09-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 kidney Kidney distal convoluted tubule
18 GSM10392 mpkCCD, vasopressin 4 h 20,561 CEA Saclay 2003-09-22 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 kidney mpkCCD stands for Murine Principal Kidney Cortical Collecting Duct. mpkCCD consists of a clonal cell line that displays some of the properties of native principal collecting duct cells, e.g. responsiveness to aldosterone and vasopressin. The current transcriptome corresponds to mpkCCD cells incubated with 10 nM vasopressin for 4 hours. Data are provided after removal of tags derived from linkers sequences. Keywords = cortical collecting duct Keywords = kidney Keywords = SADE Keywords = AVP
19 GSM10419 Kidney glomerulus 20,525 CEA Saclay 2003-09-23 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 kidney Kidney glomerulus
20 GSM10426 Kidney cortical thick ascending limb 20,018 CEA Saclay 2003-09-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 cerebrum microdissected cortical thick ascending limbs
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