Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(18)		   blood
(5)		   connective
(2)		   reproductive
(1)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(1)		   urinary
(24)		   endo/exo-crine
(0)		   embryo
(2)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(0)		   all
(54)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM134557 ovarian gene expression innthe absence of FIGLA, an oocyte specific transcription factor 47,961 national institutes of health 2006-09-02 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 ovary normal Versus FIGLA null ovary at new born developmental stage
2 GSM620801 Kidney Outer Medullary Collecting Duct 19,124 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected outer medullary Collecting Duct from kidney
3 GSM619300 Kidney Proximal Tubule, S2 18,100 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected proximal tubule, S2 from kidney
4 GSM620794 Kidney cortical Thick Ascending Limb of Henle's Loop (CTAL) 17,889 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected cortical thick ascending limb of Henle's loop (CTAL) from kidney
5 GSM619306 Kidney Medullary Thick Ascending Limb of Henle's Loop (MTAL) 17,663 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected medullary thick ascending limb of Henle's loop from kidney
6 GSM620800 Kidney Cortical Collecting Duct 17,588 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected cortical collecting duct from kidney
7 GSM620799 Kidney Connecting Tubule (CNT) 16,202 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected connecting tubule from kidney
8 GSM620798 Kidney Distal Convoluted Tubule 15,115 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected distal convoluted tubule from kidney
9 GSM619299 Kidney Proximal Tubule, S1 13,976 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected proximal tubule, S1 from kidney
10 GSM619305 Kidney Proximal Tubule, S3 12,524 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected proximal tubule, S3 from kidney
11 GSM619298 Kidney Glomerulus 11,110 Institut des Cordeliers 2010-11-09 [SAGE Sau3A] SAGE:15:Sau3A:Mus musculus (GPL5119) SAGE Mus musculus
Mus musculus		 kidney microdissected glomeruli from kidney
12 GSM23478 Kidney outer medullary collecting duct: Control 10,521 Institut des Cordeliers 2004-05-21 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 kidney microdissected outer medullary collecting duct
13 GSM23474 Kidney outer medullary collecting duct 9,833 Institut des Cordeliers 2004-05-21 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 kidney microdissected outer medullary collecting duct
14 GSM106343 acidotic mouse OMCD 8,847 Institut des Cordeliers 2006-04-24 [SAGE Sau3A] SAGE:10:Sau3A:Mus musculus (GPL275) SAGE Mus musculus
Mus musculus		 kidney microdissected outer medullary collecting duct
15 GSM151619 NB4 cell line untreated 6,776 Institut de Génétique Humaine 2006-12-15 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 bone marrow NB4 cell line (Acute Promyelocytic Leukemia model)
16 GSM151622 NB4 cell line induced to differentiate by a 48h exposure to 1µM ATRA 6,218 Institut de Génétique Humaine 2006-12-15 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 bone marrow NB4 cell line (Acute Promyelocytic Leukemia model) expposed to 1µM ATRA for 48hours
17 GSM36126 Aldosterone Producing Adenoma 13,386 Inserm Institut Cochin 2004-11-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 pooled Adrenocortical adenoma producing aldosterone. Preoperative diagnosis of primary aldosteronism with increased aldosterone, increased aldosterone to renin ratio, lateralisation of aldosterone to cortisol ratio on adrenal venous sampling. Histology: 10 mm, unique adenoma with no adjacent hyperplasia Keywords = adrenocortical adenoma aldosterone
18 GSM36127 Zona Glomerulosa (adjacent to an APA) 13,386 Inserm Institut Cochin 2004-11-24 [SAGE Sau3A] SAGE:10:Sau3A:Homo sapiens (GPL6) SAGE Homo sapiens
Homo sapiens		 adipos Microdissected zona glomerulosa adjacent to an aldosterone producing adenoma Preoperative diagnosis of primary hyperaldosteronism by increased aldosterone, increased aldosterone to renin ratio, lateralisation of the aldosterone to cortisol ratio after adrenal venous sampling. Histological confirmation of a unique 10 mm adenoma; no hyperplasia of the adjacent zona glomerulosa. Microdissection on fresh tissue with a forceps after fat cleansing: the glomerulosa comes with the adrenal capsule. Keywords = adrenocortical adenoma aldosterone
19 GSM136779 Pig melanoma cells from lung metastasis 6,131 INRA-ENVA 2006-09-19 [SAGE Sau3A] SAGE:10:Sau3A:Sus scrofa (GPL4262) SAGE Sus scrofa
Sus scrofa domestica		 lung Primary culture of melanoma cells from a lung metastasis in MeLiM minipigs
20 GSM134581 Pig melanocyte cell line PigMel 5,466 INRA-ENVA 2006-09-05 [SAGE Sau3A] SAGE:10:Sau3A:Sus scrofa (GPL4262) SAGE Sus scrofa
Sus scrofa domestica		 skin PigMel P37, normal melanocyte cell line derived from pig skin
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