Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)		   Primates
(0)		   Rodents
(36)		   Mammals
(9)		   Vertebrates
(11)		   Invertebrates
(39)		   Plants
(54)		   Bacteria
(33)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(258)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(3)		   GeneChip
(17)		   Tiling Array
(29)		   cDNA Array
(125)		   Oligo Array
(78)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(3)		   All
(258)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3923 Affymetrix Drosophila Melanogaster Antisense Tiling Array 3,214,785 Affymetrix, Inc. 2006-06-26 Affymetrix Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Affymetrix Drosophila Melanogaster Antisense Tiling Array, 35bp Resolution Oligonucleotide Tiling Array Annotation in this record is based on BDGP Release 4, Apr 2004 version Keywords: synthetic, oligonucleotide, tiling array
2 GPL3943 Arabidopsis Whole Genome Tiling Array 17-rc-3 818,872 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-3, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
3 GPL3944 Arabidopsis Whole Genome Tiling Array 17-rc-2 818,872 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-2, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
4 GPL3945 Arabidopsis Whole Genome Tiling Array 17-rc-5 818,872 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-5, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
5 GPL3946 Arabidopsis Whole Genome Tiling Array 17-rc-6 818,872 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-6, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
6 GPL3947 Arabidopsis Whole Genome Tiling Array 17-rc-4 818,872 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-4, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
7 GPL3940 Arabidopsis Whole Genome Tiling Array 17-rc-1 818,871 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-rc-1, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
8 GPL3932 Arabidopsis Whole Genome Tiling Array 17-1 818,714 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-1, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
9 GPL3933 Arabidopsis Whole Genome Tiling Array 17-2 818,714 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-2, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
10 GPL3934 Arabidopsis Whole Genome Tiling Array 17-3 818,714 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-3, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
11 GPL3938 Arabidopsis Whole Genome Tiling Array 17-5 818,714 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-5, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
12 GPL3939 Arabidopsis Whole Genome Tiling Array 17-6 818,714 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-6, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
13 GPL3937 Arabidopsis Whole Genome Tiling Array 17-4 797,133 The Salk Institute 2006-06-28 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 17-4, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was originally used to make these chips, however, the position coordinates in the table are remapped on and refer to the Arabidopsis genome version 6 sequence.
14 GPL3725 Affymetrix ENCODE Tiling Array - SENSE - NCBI build 35 736,787 Affymetrix, Inc. 2006-05-03 Affymetrix Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Affymetrix ENCODE Tiling Array - SENSE - NCBI build 35, 21bp resolution oligonucleotide tiling array. Annotation in this record based on NCBI build 35.
15 GPL3786 SKCC Salmonella 380K tiling array 382,864 Vaccine Research Institute of San Diego 2006-05-19 NimbleGen Salmonella
Salmonella		 Tiling Array in situ oligonucleotide, SKCC Salmonella 380K tiling array, This set includes 382864 46~50mer oligonucleotides, mostly 50-mers. The probes were designed based on Salmonella typhimurium LT2 (NC_003197.1) genome, with a moving window of about 12 bases.
16 GPL3847 Affymetrix S. pombe Tiling 1.0FR Array 125,552 The University of Tokyo 2006-06-08 Affymetrix Schizosaccharomyces pombe
Schizosaccharomyces pombe		 Tiling Array in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array, The S. pombe tiling Array consists of 6 million probe pairs tiled through the complete Schizosaccharomyces pombe genome. Probes are tiled for both strands of the genome at an average of 20 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 5 base pairs on adjacent probes. The information of oligo probes on the arrays (sequence and location on the chip) is available from Affymetrix.
17 GPL3703 Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard) 24,960 UNC-Chapel Hill 2006-04-25 Center for Genomics Research, Harvard University Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Tiling Array spotted oligonucleotide, Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard), The sequence from S. cerevisiae chromosome III was fragmented into 50-mers overlapping every 20 base pairs. Potentially cross-hybridizing probes were filtered by BLASTing these sequences against the entire genome and eliminating sequences from chromosome III that included 5 or more contiguous probes with perfect BLAST matches, leaving 30 contigs covering 278,960 base pairs. Oligonucleotides were also tiled over one kilobase of 230 promoters on other chromosomes, starting at -900 from the start codon and extending to +100.
18 GPL3722 ChromosomeVI tiling array (rikDACF) 5,028 The University of Tokyo 2006-05-03 Affymetrix Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Tiling Array in situ oligonucleotide, ChromosomeVI tiling array (rikDACF),
19 GPL3773 Su(Ste) tiling and microRNA array (#1) 3,968 University of Massachusetts Medical School 2006-05-16 LC Sciences (Houston, TX, USA) Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Su(Ste) tiling and microRNA array (#1),
20 GPL3803 Su(Ste) tiling and microRNA array (#2) 3,968 University of Massachusetts Medical School 2006-05-24 LC Sciences (Houston, TX, USA) Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Su(Ste) tiling and microRNA array (#2),
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