Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(756)
  Primates
(5)
  Rodents
(391)
  Mammals
(31)
  Vertebrates
(52)
  Invertebrates
(187)
  Plants
(210)
  Bacteria
(89)
  Viruses
(1)
  Phages
(0)
  Unclassified
(13)
  All
(1,736)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(569)
  Tiling Array
(136)
  cDNA Array
(101)
  Oligo Array
(605)
  Bead Array
(145)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(171)
  Other
(2)
  All
(1,736)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation: ChIP-chip data (GSE20471) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) NIH/NIEHS 2010-02-22 Drosophila melanogaster
Drosophila melanogaster
44,730,462
(2,130,022 x 21)
2 19 by_platform
by_series
2 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation (GSE20472) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) NIH/NIEHS 2010-02-22 Drosophila melanogaster
Drosophila melanogaster
44,730,462
(2,130,022 x 21)
2 19 by_platform
by_series
3 Evolutionarily conserved replication timing profiles distinguish cell types and predict long range chromatin interaction (GSE20027) [Tiling Array] FSU/NimbleGen Human 2.1M Whole Genome Tiling (GPL9973) Florida State University 2010-01-25 Homo sapiens
Homo sapiens
28,101,827
(2,161,679 x 13)
3 10 by_platform
by_series
4 CATCH-IT method for measuring nucleosome turnover (GSE19788) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2010-01-07 Drosophila melanogaster
Drosophila melanogaster
25,560,264
(2,130,022 x 12)
12 by_platform
by_series
5 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design (GPL9833) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus
23,512,544
(2,137,504 x 11)
11 by_platform
by_series
6 Methylated DNA Immunoprecipitation (MeDIP) using a custom type 2 diabetes and related phenotypes array (GSE20553) [Tiling Array] NimbleGen/UCL human 388K tiling array (GPL10113) UCL Cancer Institute 2010-02-26 Homo sapiens
Homo sapiens
23,270,100
(387,835 x 60)
60 by_platform
by_series
7 ChIP-chip from mouse male and female adult livers and P12.5 embryos with H3K27me3 (GSE20617) [Tiling Array] NimbleGen Mouse 2.1 M array 10 of 10 (GPL10129) University of Washington 2010-03-03 Mus musculus
Mus musculus
8,407,892
(2,101,973 x 4)
2 2 by_platform
by_series
8 The activation potential of MOF is constrained for dosage compensation (GSE20695) [Tiling Array] Adolf Butenandt Institute Drosophila melanogaster 385K Tiling Array version 1 (GPL7107) Adolf-Butenandt Institute at the LMU University Munich 2010-03-09 Drosophila melanogaster
Drosophila melanogaster
8,078,448
(384,688 x 21)
21 by_platform
by_series
9 Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes (GSE20367) [Tiling Array] CBCB Listeria monocytogenes 385K v1.0 (GPL8942) Illinois Insititute of Technology 2010-02-17 Listeria monocytogenes
Listeria monocytogenes
6,930,000
(385,000 x 18)
18 by_platform
by_series
10 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2M 090316_MM9_Promoter_MeDIP_HX1 tiling design (GPL9832) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus
6,159,966
(2,053,322 x 3)
3 by_platform
by_series
11 Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription (GSE21110) [Tiling Array] Affymetrix ENCODE Tiling Array - SENSE - NCBI build 35 (GPL3725) University of Virginia 2010-03-29 Homo sapiens
Homo sapiens
5,157,509
(736,787 x 7)
6 1 by_platform
by_series
12 Chromatin signature of embryonic pluripotency is established during zygotic genome activation [Danio rerio] (GSE20023) [Tiling Array] NimbleGen Danio rerio 385K Zv7 tiling array (GPL9970) Tongji University 2010-01-25 Danio rerio
Danio rerio
4,207,284
(350,607 x 12)
12 by_platform
by_series
13 Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH (GSE19915) [Tiling Array] SWEGENE_BAC_32K_Full (GPL4723) Lund University 2010-01-15 Homo sapiens
Homo sapiens
3,604,176
(34,992 x 103)
103 by_platform
by_series
14 Trichoderma virens transcript levels during mycoparasitism (GSE19832) [Tiling Array] ENS SGDB Trichoderma virens Tv10_Tiling93_1 (GPL9893) École Normale Supérieure 2010-01-11 Hypocrea virens
Hypocrea virens
2,492,232
(415,372 x 6)
6 by_platform
by_series
15 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design (GPL9899) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus
2,335,842
(389,307 x 6)
6 by_platform
by_series
16 The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation (GSE21072) [Tiling Array] ENS SGDB Trichoderma reesei Tr20_Tiling140_1 240k oligo array (GPL9076) École Normale Supérieure 2010-03-25 Hypocrea jecorina
Hypocrea jecorina
1,908,704
(238,588 x 8)
8 by_platform
by_series
17 RNA Pol III transcriptomes and relationships to Pol II promoters, enhancer-binding factors and chromatin domains (GSE20609) [Tiling Array] Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10 (GPL10027) NIAID/NIH 2010-03-03 Homo sapiens
Homo sapiens
974,016
(974,016 x 1)
1 by_platform
by_series
18 RNA Pol III transcriptomes and relationships to Pol II promoters, enhancer-binding factors and chromatin domains (GSE20609) [Tiling Array] Agilent-017034 Human Whole Genome ChIP Tiling Array Set 2 of 10 (GPL10028) NIAID/NIH 2010-03-03 Homo sapiens
Homo sapiens
974,016
(974,016 x 1)
1 by_platform
by_series
19 RNA Pol III transcriptomes and relationships to Pol II promoters, enhancer-binding factors and chromatin domains (GSE20609) [Tiling Array] Agilent-017036 Human Whole Genome ChIP Tiling Array Set 3 of 10 (GPL10029) NIAID/NIH 2010-03-03 Homo sapiens
Homo sapiens
974,016
(974,016 x 1)
1 by_platform
by_series
20 RNA Pol III transcriptomes and relationships to Pol II promoters, enhancer-binding factors and chromatin domains (GSE20609) [Tiling Array] Agilent-017038 Human Whole Genome ChIP Tiling Array Set 4 of 10 (GPL10030) NIAID/NIH 2010-03-03 Homo sapiens
Homo sapiens
974,016
(974,016 x 1)
1 by_platform
by_series
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