| 1 |
GPL10187 |
Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04] |
5,483 |
Friedrich Miescher Institute for Biomedical Research |
2010-03-16 |
Affymetrix |
Schizosaccharomyces pombe
 |
Tiling Array |
in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04], |
| 2 |
GPL10129 |
NimbleGen Mouse 2.1 M array 10 of 10 |
2,101,973 |
University of Washington |
2010-03-03 |
NimbleGen |
Mus musculus
 |
Tiling Array |
in situ oligonucleotide, NimbleGen Mouse 2.1 M array 10 of 10, 2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp |
| 3 |
GPL10113 |
NimbleGen/UCL human 388K tiling array |
387,835 |
UCL Cancer Institute |
2010-02-26 |
NimbleGen |
Homo sapiens
 |
Tiling Array |
spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets. |
| 4 |
GPL10083 |
KSHV tiling microarray AMADID: 017577 |
13,746 |
UCSF |
2010-02-22 |
Agilent Technologies |
Homo sapiens,Human herpesvirus 8 type M
 |
Tiling Array |
in situ oligonucleotide, KSHV tiling microarray AMADID: 017577, Probes based on KSHV (U75698.1) and Homo sapiens for select human transcripts. |
| 5 |
GPL10027 |
Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10, Human Whole Genome ChIP Tiling Array Set 1 of 10 Arrays of this design have barcodes that begin with 16017025 or 2517025. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 6 |
GPL10028 |
Agilent-017034 Human Whole Genome ChIP Tiling Array Set 2 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017034 Human Whole Genome ChIP Tiling Array Set 2 of 10, Human Whole Genome ChIP Tiling Array Set 2 of 10 Arrays of this design have barcodes that begin with 16017034 or 2517034. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 7 |
GPL10029 |
Agilent-017036 Human Whole Genome ChIP Tiling Array Set 3 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017036 Human Whole Genome ChIP Tiling Array Set 3 of 10, Human Whole Genome ChIP Tiling Array Set 3 of 10 Arrays of this design have barcodes that begin with 16017036 or 2517036. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 8 |
GPL10030 |
Agilent-017038 Human Whole Genome ChIP Tiling Array Set 4 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017038 Human Whole Genome ChIP Tiling Array Set 4 of 10, Human Whole Genome ChIP Tiling Array Set 4 of 10 Arrays of this design have barcodes that begin with 16017038 or 2517038. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 9 |
GPL10031 |
Agilent-017042 Human Whole Genome ChIP Tiling Array Set 5 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017042 Human Whole Genome ChIP Tiling Array Set 5 of 10, Human Whole Genome ChIP Tiling Array Set 5 of 10 Arrays of this design have barcodes that begin with 16017042 or 2517042. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 10 |
GPL10032 |
Agilent-017044 Human Whole Genome ChIP Tiling Array Set 6 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017044 Human Whole Genome ChIP Tiling Array Set 6 of 10, Human Whole Genome ChIP Tiling Array Set 6 of 10 Arrays of this design have barcodes that begin with 16017044 or 2517044. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 11 |
GPL10033 |
Agilent-017045 Human Whole Genome ChIP Tiling Array Set 7 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017045 Human Whole Genome ChIP Tiling Array Set 7 of 10, Human Whole Genome ChIP Tiling Array Set 7 of 10 Arrays of this design have barcodes that begin with 16017045 or 2517045. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 12 |
GPL10034 |
Agilent-017046 Human Whole Genome ChIP Tiling Array Set 8 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017046 Human Whole Genome ChIP Tiling Array Set 8 of 10, Human Whole Genome ChIP Tiling Array Set 8 of 10 Arrays of this design have barcodes that begin with 16017046 or 2517046. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 13 |
GPL10035 |
Agilent-017047 Human Whole Genome ChIP Tiling Array Set 9 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017047 Human Whole Genome ChIP Tiling Array Set 9 of 10, Human Whole Genome ChIP Tiling Array Set 9 of 10 Arrays of this design have barcodes that begin with 16017047 or 2517047. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 14 |
GPL10036 |
Agilent-017048 Human Whole Genome ChIP Tiling Array Set 10 of 10 |
974,016 |
Agilent Technologies |
2010-02-11 |
Agilent Technologies |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Agilent-017048 Human Whole Genome ChIP Tiling Array Set 10 of 10, Human Whole Genome ChIP Tiling Array Set 10 of 10 Arrays of this design have barcodes that begin with 16017048 or 2517048. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 15 |
GPL10011 |
HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0 |
5,002 |
Medical Research Council |
2010-02-04 |
University of Liverpool Microarray Facility |
Mus musculus
|
Tiling Array |
spotted oligonucleotide, HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0, Tiling path array of oligos on HoxB and HoxD clusters :1 oligo / 250 bp in the core region containing the Hox genes,1 oligo / 500 bp in the flanking regions,1 oligo / 50kb outside flanking regions.These tiling oligos are designed alternatively on each strand. The position number (NCBI built m35) in the files is the 5’ base for the forward oligos and the 3’ for the reverse oligos (so one given oligo and the corresponding reverse oligo have the same position number). Other regions on the array are:Oct4 exons, promoter, flanking regions with low resolution,Sox2 exons, promoter, flanking regions with low resolution, Nanog exons, promoter. Control genes for array are; Ncl : exons, promoter, flanking regions with low resolution, RPL19 exons, Rrm2 exons, HPRT exons, promoter, c-myc, exons and other regions contains MAR and CTCF binding sites, Hbb-b1 exons and regulatory elements, Cdkn1a exons, promoter and regulatory elements, Oprk1 exons and regulatory elements and Mouse major and minor satellite DNA. Mismatch control oligos are the same as the oligos in exons but containing 1, 3, 5,7 ,10 mismatches. (NB : the Ncl mismatch oligos have been designed on the wrong strand). Other control probes are NM_000015.1 and Drosophila sequences. |
| 16 |
GPL9973 |
FSU/NimbleGen Human 2.1M Whole Genome Tiling |
2,161,679 |
Florida State University |
2010-01-25 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, FSU/NimbleGen Human 2.1M Whole Genome Tiling, Build: Hg18, NCBI 36 |
| 17 |
GPL9970 |
NimbleGen Danio rerio 385K Zv7 tiling array |
350,607 |
Tongji University |
2010-01-25 |
Nimblegen |
Danio rerio
 |
Tiling Array |
in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files. |
| 18 |
GPL9931 |
Ectocarpus siliculosus tiling array ChIP1 |
386,131 |
Systemix Institute |
2010-01-15 |
Roche-Nimblegen |
Ectocarpus siliculosus
 |
Tiling Array |
in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP1, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization. |
| 19 |
GPL9932 |
Ectocarpus siliculosus tiling array ChIP2 |
386,131 |
Systemix Institute |
2010-01-15 |
Roche-Nimblegen |
Ectocarpus siliculosus
|
Tiling Array |
in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP2, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization. |
| 20 |
GPL9933 |
Ectocarpus siliculosus tiling array ChIP3 |
386,131 |
Systemix Institute |
2010-01-15 |
Roche-Nimblegen |
Ectocarpus siliculosus
|
Tiling Array |
in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP3, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization. |
|