Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(4)
  Rodents
(40)
  Mammals
(13)
  Vertebrates
(32)
  Invertebrates
(30)
  Plants
(76)
  Bacteria
(73)
  Viruses
(4)
  Phages
(0)
  Unclassified
(19)
  All
(394)
 
  SAGE NlaIII
(6)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(20)
  Tiling Array
(27)
  cDNA Array
(58)
  Oligo Array
(216)
  Bead Array
(4)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(3)
  HT-Seq
(57)
  Other
(2)
  All
(394)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10187 Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04] 5,483 Friedrich Miescher Institute for Biomedical Research 2010-03-16 Affymetrix Schizosaccharomyces pombe
Schizosaccharomyces pombe
Tiling Array in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04],
2 GPL10129 NimbleGen Mouse 2.1 M array 10 of 10 2,101,973 University of Washington 2010-03-03 NimbleGen Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, NimbleGen Mouse 2.1 M array 10 of 10, 2007-07-27_MM8_TILE_ChIP_10_HX1 Annotation in this record based on NCBI mouse build 36. Regions of potential H3K27me3 target genes from mm8, isothermal tiling oligos at 100bp
3 GPL10113 NimbleGen/UCL human 388K tiling array 387,835 UCL Cancer Institute 2010-02-26 NimbleGen Homo sapiens
Homo sapiens
Tiling Array spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets.
4 GPL10083 KSHV tiling microarray AMADID: 017577 13,746 UCSF 2010-02-22 Agilent Technologies Homo sapiens,Human herpesvirus 8 type M
Homo sapiens,Human herpesvirus 8 type M
Tiling Array in situ oligonucleotide, KSHV tiling microarray AMADID: 017577, Probes based on KSHV (U75698.1) and Homo sapiens for select human transcripts.
5 GPL10027 Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10, Human Whole Genome ChIP Tiling Array Set 1 of 10 Arrays of this design have barcodes that begin with 16017025 or 2517025. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6 GPL10028 Agilent-017034 Human Whole Genome ChIP Tiling Array Set 2 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017034 Human Whole Genome ChIP Tiling Array Set 2 of 10, Human Whole Genome ChIP Tiling Array Set 2 of 10 Arrays of this design have barcodes that begin with 16017034 or 2517034. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
7 GPL10029 Agilent-017036 Human Whole Genome ChIP Tiling Array Set 3 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017036 Human Whole Genome ChIP Tiling Array Set 3 of 10, Human Whole Genome ChIP Tiling Array Set 3 of 10 Arrays of this design have barcodes that begin with 16017036 or 2517036. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
8 GPL10030 Agilent-017038 Human Whole Genome ChIP Tiling Array Set 4 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017038 Human Whole Genome ChIP Tiling Array Set 4 of 10, Human Whole Genome ChIP Tiling Array Set 4 of 10 Arrays of this design have barcodes that begin with 16017038 or 2517038. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL10031 Agilent-017042 Human Whole Genome ChIP Tiling Array Set 5 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017042 Human Whole Genome ChIP Tiling Array Set 5 of 10, Human Whole Genome ChIP Tiling Array Set 5 of 10 Arrays of this design have barcodes that begin with 16017042 or 2517042. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
10 GPL10032 Agilent-017044 Human Whole Genome ChIP Tiling Array Set 6 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017044 Human Whole Genome ChIP Tiling Array Set 6 of 10, Human Whole Genome ChIP Tiling Array Set 6 of 10 Arrays of this design have barcodes that begin with 16017044 or 2517044. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
11 GPL10033 Agilent-017045 Human Whole Genome ChIP Tiling Array Set 7 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017045 Human Whole Genome ChIP Tiling Array Set 7 of 10, Human Whole Genome ChIP Tiling Array Set 7 of 10 Arrays of this design have barcodes that begin with 16017045 or 2517045. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
12 GPL10034 Agilent-017046 Human Whole Genome ChIP Tiling Array Set 8 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017046 Human Whole Genome ChIP Tiling Array Set 8 of 10, Human Whole Genome ChIP Tiling Array Set 8 of 10 Arrays of this design have barcodes that begin with 16017046 or 2517046. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13 GPL10035 Agilent-017047 Human Whole Genome ChIP Tiling Array Set 9 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017047 Human Whole Genome ChIP Tiling Array Set 9 of 10, Human Whole Genome ChIP Tiling Array Set 9 of 10 Arrays of this design have barcodes that begin with 16017047 or 2517047. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
14 GPL10036 Agilent-017048 Human Whole Genome ChIP Tiling Array Set 10 of 10 974,016 Agilent Technologies 2010-02-11 Agilent Technologies Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Agilent-017048 Human Whole Genome ChIP Tiling Array Set 10 of 10, Human Whole Genome ChIP Tiling Array Set 10 of 10 Arrays of this design have barcodes that begin with 16017048 or 2517048. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL10011 HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0 5,002 Medical Research Council 2010-02-04 University of Liverpool Microarray Facility Mus musculus
Mus musculus
Tiling Array spotted oligonucleotide, HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0, Tiling path array of oligos on HoxB and HoxD clusters :1 oligo / 250 bp in the core region containing the Hox genes,1 oligo / 500 bp in the flanking regions,1 oligo / 50kb outside flanking regions.These tiling oligos are designed alternatively on each strand. The position number (NCBI built m35) in the files is the 5’ base for the forward oligos and the 3’ for the reverse oligos (so one given oligo and the corresponding reverse oligo have the same position number). Other regions on the array are:Oct4 exons, promoter, flanking regions with low resolution,Sox2 exons, promoter, flanking regions with low resolution, Nanog exons, promoter. Control genes for array are; Ncl : exons, promoter, flanking regions with low resolution, RPL19 exons, Rrm2 exons, HPRT exons, promoter, c-myc, exons and other regions contains MAR and CTCF binding sites, Hbb-b1 exons and regulatory elements, Cdkn1a exons, promoter and regulatory elements, Oprk1 exons and regulatory elements and Mouse major and minor satellite DNA. Mismatch control oligos are the same as the oligos in exons but containing 1, 3, 5,7 ,10 mismatches. (NB : the Ncl mismatch oligos have been designed on the wrong strand). Other control probes are NM_000015.1 and Drosophila sequences.
16 GPL9973 FSU/NimbleGen Human 2.1M Whole Genome Tiling 2,161,679 Florida State University 2010-01-25 NimbleGen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, FSU/NimbleGen Human 2.1M Whole Genome Tiling, Build: Hg18, NCBI 36
17 GPL9970 NimbleGen Danio rerio 385K Zv7 tiling array 350,607 Tongji University 2010-01-25 Nimblegen Danio rerio
Danio rerio
Tiling Array in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files.
18 GPL9931 Ectocarpus siliculosus tiling array ChIP1 386,131 Systemix Institute 2010-01-15 Roche-Nimblegen Ectocarpus siliculosus
Ectocarpus siliculosus
Tiling Array in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP1, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
19 GPL9932 Ectocarpus siliculosus tiling array ChIP2 386,131 Systemix Institute 2010-01-15 Roche-Nimblegen Ectocarpus siliculosus
Ectocarpus siliculosus
Tiling Array in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP2, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
20 GPL9933 Ectocarpus siliculosus tiling array ChIP3 386,131 Systemix Institute 2010-01-15 Roche-Nimblegen Ectocarpus siliculosus
Ectocarpus siliculosus
Tiling Array in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP3, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
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