Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(83)
  SAGE RsaI
(1)
  SAGE Sau3A
(5)
  MPSS
(18)
  GeneChip
(809)
  Tiling Array
(1,310)
  cDNA Array
(2,770)
  Oligo Array
(5,679)
  Bead Array
(210)
  Protein Array
(1)
  Antibody
(28)
  RT-PCR
(209)
  HT-Seq
(1,710)
  Other
(187)
  All
(13,032)
 
1   |   2   |   3   |   4   |   5      »      [66]
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL7715 [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array 0 Affymetrix, Inc. 2008-12-01 Affymetrix Schizosaccharomyces pombe
Schizosaccharomyces pombe
Tiling Array in situ oligonucleotide, [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® S. pombe Tiling 1.0FR Array is designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments. The S. pombe 1.0FR Array is a single array comprised of over 1.2 million perfect match/mismatch probe pairs tiled through the complete Schizosaccharomyces pombe genome. Sequence information for chromosomes 1 to 3 and telomere clones was drawn from the Wellcome Trust Sanger Institute (September 2004). Probes are tiled for both strands of the genome at an average of 20 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 5 base pairs on adjacent probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
2 GPL7250 [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array 0 Affymetrix, Inc. 2008-09-04 Affymetrix Saccharomyces cerevisiae
Saccharomyces cerevisiae
Tiling Array in situ oligonucleotide, [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below.
3 GPL7249 [Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array 0 Affymetrix, Inc. 2008-09-04 Affymetrix Saccharomyces cerevisiae
Saccharomyces cerevisiae
Tiling Array in situ oligonucleotide, [Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below.
4 GPL6591 [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array 0 Tohoku University 2008-03-17 Affymetrix Pseudomonas
Pseudomonas
Tiling Array in situ oligonucleotide, [pCAR1_8b520435F] Affymetrix CustomExpress IncP-7 plasmid pCAR1 Tiling Array, This is an Affymetrix custom-commercial tiling array that covers the IncP-7 plasmid pCAR1 (RefSeq: NC_004444) at 9-bp density. BPMAP files are provided as supplementary files. pCAR1_8b520435FF-3.bpmap represents the forward strand of pCAR1, and pCAR1_8b520435FR-3.bpmap represents the reverse strand of pCAR1.
5 GPL11370 [olfactomw520640F] Custom Affymetrix olfactory genome tiling array 0 UCSF 2010-12-30 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [olfactomw520640F] Custom Affymetrix olfactory genome tiling array, GeneChip CustomExpress format 49-7875 Olfactomw520640F
6 GPL6450 [Mm35b_P07R] Affymetrix Mouse Tiling 2.0R Set, Array 7 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P07R] Affymetrix Mouse Tiling 2.0R Set, Array 7, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
7 GPL6449 [Mm35b_P06R] Affymetrix Mouse Tiling 2.0R Set, Array 6 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P06R] Affymetrix Mouse Tiling 2.0R Set, Array 6, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
8 GPL6448 [Mm35b_P05R] Affymetrix Mouse Tiling 2.0R Set, Array 5 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P05R] Affymetrix Mouse Tiling 2.0R Set, Array 5, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
9 GPL6447 [Mm35b_P04R] Affymetrix Mouse Tiling 2.0R Set, Array 4 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P04R] Affymetrix Mouse Tiling 2.0R Set, Array 4, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
10 GPL6446 [Mm35b_P03R] Affymetrix Mouse Tiling 2.0R Set, Array 3 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P03R] Affymetrix Mouse Tiling 2.0R Set, Array 3, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
11 GPL6445 [Mm35b_P02R] Affymetrix Mouse Tiling 2.0R Set, Array 2 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P02R] Affymetrix Mouse Tiling 2.0R Set, Array 2, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
12 GPL6444 [Mm35b_P01R] Affymetrix Mouse Tiling 2.0R Set, Array 1 0 Affymetrix, Inc. 2008-02-01 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_P01R] Affymetrix Mouse Tiling 2.0R Set, Array 1, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mouse Tiling 2.0R Array Set is designed for chromatin immunoprecipitation (ChIP) experiments. This set of seven arrays contains approximately 45 million oligonucleotide probes to interrogate the mouse genome. Each array in the set contains over 6.5 million perfect match probes to specifically interrogate genomic regions. Sequences used in the design of the Mouse Tiling 2.0R Array Set were selected from NCBI mouse genome assembly (Build 33). Repetitive elements were removed by RepeatMasker. The Mouse Tiling 2.0R Array Set is available either as a whole-genome set of seven arrays (P/N 900852), or individual arrays from the set may be purchased separately. Probes are tiled at an average resolution of 35 base pairs, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10bp between probes. Oligonucleotide probes are synthesized in situ complementary to each corresponding sequence. BPMAP and other files can be downloaded from the Affymetrix Web site below.
13 GPL13207 [Mm35b_M14R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M14R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
14 GPL13206 [Mm35b_M13R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M13R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
15 GPL13205 [Mm35b_M12R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M12R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
16 GPL13204 [Mm35b_M11R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M11R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
17 GPL13203 [Mm35b_M10R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M10R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
18 GPL13202 [Mm35b_M09R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M09R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
19 GPL13201 [Mm35b_M08R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M08R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
20 GPL13200 [Mm35b_M07R_v01] Affymetrix Mouse Tiling 1.1R Array Set 0 Affymetrix, Inc. 2011-02-18 Affymetrix Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, [Mm35b_M07R_v01] Affymetrix Mouse Tiling 1.1R Array Set,
1   |   2   |   3   |   4   |   5      »      [66]