Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(743)		   Primates
(5)		   Rodents
(386)		   Mammals
(31)		   Vertebrates
(51)		   Invertebrates
(187)		   Plants
(209)		   Bacteria
(89)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(1,715)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(559)		   Tiling Array
(136)		   cDNA Array
(101)		   Oligo Array
(596)		   Bead Array
(143)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(3)		   HT-Seq
(171)		   Other
(2)		   All
(1,715)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Expression data from cid14 delta and air1 delta strains (GSE20905) [Tiling Array] Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04] (GPL10187) Friedrich Miescher Institute for Biomedical Research 2010-03-16 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 32,898
(5,483 x 6) 		6 by_platform
by_series
2 Genomic analysis of replication profiles identifies RFCCtf18 as a key mediator of the replication stress response (GSE21014) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Institute of Human Genetics - CNRS 2010-03-23 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 32
(0 x 32) 		32 by_platform
by_series
3 Genome-wide analysis of SAS-I-mediated H4 K16 acetylation (GSE19962) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Max-Planck-Institut for molecular Genetics 2010-01-20 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 4
(0 x 4) 		2 2 by_platform
by_series
4 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design (GPL9833) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus		 23,512,544
(2,137,504 x 11) 		11 by_platform
by_series
5 ChIP-chip from mouse male and female adult livers and P12.5 embryos with H3K27me3 (GSE20617) [Tiling Array] NimbleGen Mouse 2.1 M array 10 of 10 (GPL10129) University of Washington 2010-03-03 Mus musculus
Mus musculus		 8,407,892
(2,101,973 x 4) 		2 2 by_platform
by_series
6 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mus musculus 2M 090316_MM9_Promoter_MeDIP_HX1 tiling design (GPL9832) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus		 6,159,966
(2,053,322 x 3) 		3 by_platform
by_series
7 Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis (GSE19884) [Tiling Array] NimbleGen Mouse 2006-08-03_MM8_60mer_expr tiling design (GPL9899) Fred Hutchinson Cancer Research Center 2010-01-13 Mus musculus
Mus musculus		 2,335,842
(389,307 x 6) 		6 by_platform
by_series
8 Ash1 ChIP-chip data from murine Embyonic Stem cells (GSE20063) [Tiling Array] Agilent-014928 Mouse Promoter tiling array set. Microarray 1 of 2 (GPL6691) Whitehead Institute 2010-01-27 Mus musculus
Mus musculus		 486,800
(243,400 x 2) 		2 by_platform
by_series
9 Ash1 ChIP-chip data from murine Embyonic Stem cells (GSE20063) [Tiling Array] Agilent-014929 Mouse Promoter tiling array set. Microarray 2 of 2 (GPL6692) Whitehead Institute 2010-01-27 Mus musculus
Mus musculus		 486,466
(243,233 x 2) 		2 by_platform
by_series
10 Murine Embryonic Stems Cells: H3K27me3 in Undifferentiated (UD) and Day 3 (D3) differentiated ES cells (GSE20201) [Tiling Array] HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0 (GPL10011) Medical Research Council 2010-02-04 Mus musculus
Mus musculus		 60,024
(5,002 x 12) 		12 by_platform
by_series
11 ChIP for H3K27me3 in Murine ES Cells: wild type and Ring1B-/- cells (GSE20213) [Tiling Array] HGU-MRC-Bickmore Mouse Hoxb/d 22K tiling v1.0 (GPL10011) Medical Research Council 2010-02-05 Mus musculus
Mus musculus		 50,020
(5,002 x 10) 		10 by_platform
by_series
12 Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes (GSE20367) [Tiling Array] CBCB Listeria monocytogenes 385K v1.0 (GPL8942) Illinois Insititute of Technology 2010-02-17 Listeria monocytogenes
Listeria monocytogenes		 6,930,000
(385,000 x 18) 		18 by_platform
by_series
13 Trichoderma virens transcript levels during mycoparasitism (GSE19832) [Tiling Array] ENS SGDB Trichoderma virens Tv10_Tiling93_1 (GPL9893) École Normale Supérieure 2010-01-11 Hypocrea virens
Hypocrea virens		 2,492,232
(415,372 x 6) 		6 by_platform
by_series
14 The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation (GSE21072) [Tiling Array] ENS SGDB Trichoderma reesei Tr20_Tiling140_1 240k oligo array (GPL9076) École Normale Supérieure 2010-03-25 Hypocrea jecorina
Hypocrea jecorina		 1,908,704
(238,588 x 8) 		8 by_platform
by_series
15 Mock or latently infected KSHV cells (BCBL, SLK and HFF) (GSE20443) [Tiling Array] KSHV tiling microarray AMADID: 017577 (GPL10083) UCSF 2010-02-22 Homo sapiens,unidentified
Homo sapiens,unidentified		 164,952
(13,746 x 12) 		10 2 by_platform
by_series
16 Evolutionarily conserved replication timing profiles distinguish cell types and predict long range chromatin interaction (GSE20027) [Tiling Array] FSU/NimbleGen Human 2.1M Whole Genome Tiling (GPL9973) Florida State University 2010-01-25 Homo sapiens
Homo sapiens		 28,101,827
(2,161,679 x 13) 		3 10 by_platform
by_series
17 Methylated DNA Immunoprecipitation (MeDIP) using a custom type 2 diabetes and related phenotypes array (GSE20553) [Tiling Array] NimbleGen/UCL human 388K tiling array (GPL10113) UCL Cancer Institute 2010-02-26 Homo sapiens
Homo sapiens		 23,270,100
(387,835 x 60) 		60 by_platform
by_series
18 Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription (GSE21110) [Tiling Array] Affymetrix ENCODE Tiling Array - SENSE - NCBI build 35 (GPL3725) University of Virginia 2010-03-29 Homo sapiens
Homo sapiens		 5,157,509
(736,787 x 7) 		6 1 by_platform
by_series
19 Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH (GSE19915) [Tiling Array] SWEGENE_BAC_32K_Full (GPL4723) Lund University 2010-01-15 Homo sapiens
Homo sapiens		 3,604,176
(34,992 x 103) 		103 by_platform
by_series
20 RNA Pol III transcriptomes and relationships to Pol II promoters, enhancer-binding factors and chromatin domains (GSE20609) [Tiling Array] Agilent-017025 Human Whole Genome ChIP Tiling Array Set 1 of 10 (GPL10027) NIAID/NIH 2010-03-03 Homo sapiens
Homo sapiens		 974,016
(974,016 x 1) 		1 by_platform
by_series
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