Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,851)
  Primates
(60)
  Rodents
(2,564)
  Mammals
(41)
  Vertebrates
(39)
  Invertebrates
(59)
  Plants
(464)
  Bacteria
(78)
  Viruses
(0)
  Phages
(0)
  Unclassified
(146)
  All
(6,302)
 
  SAGE NlaIII
(24)
  SAGE RsaI
(0)
  SAGE Sau3A
(5)
  MPSS
(32)
  GeneChip
(2,621)
  Tiling Array
(155)
  cDNA Array
(1,964)
  Oligo Array
(1,212)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(9)
  RT-PCR
(15)
  HT-Seq
(0)
  Other
(265)
  All
(6,302)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(134)
  lung
(6)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(15)
  all
(155)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM34571 Mock ChIP 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Mock ChIP description:Mock ChIP experiment using strain without tag.
2 GSM34572 Sup fraction after mock ChIP 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after mock ChIP description:Sup fraction of Mock ChIP experiment using strain without tag. Sup fraction used for normalization of GSM34571
3 GSM34573 Time Course Experiment after HO induction. Time (0h) ChIP fraction (I) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S.cerevisiae title:Time Course Experiment after HO induction. Time (0h) ChIP fraction (I) description:Time Course Experiment after HO induction. Time (0h) ChIP fraction (I).
4 GSM34574 Time Course Experiment after HO induction. Time (0h) Chip fraction (II) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (0h) Chip fraction (II) description:Time Course Experiment after HO induction. Time (0h) ChIP fraction (II). Only data for time (0h) are duplicated.
5 GSM34575 Sup fraction of Time (0h) 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction of Time (0h) description:Time Course Experiment after HO induction. Time (0h) Sup fraction used for normalization of GSM34573 and GSM34574.
6 GSM34576 Time Course Experiment after HO induction. Time (2h) ChIP fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (2h) ChIP fraction description:Time Course Experiment after HO induction. Time (2h) ChIP fraction.
7 GSM34577 Time Course Experiment after HO induction. Time (2h) Sup fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (2h) Sup fraction description:Time Course Experiment after HO induction. Time (2h) Sup fraction used for normalization of GSM34576.
8 GSM34578 Time Course Experiment after HO induction. Time (4h) ChIP fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (4h) ChIP fraction description:Time course experiment after HO induction (4h).
9 GSM34579 Time Course Experiment after HO induction. Time (4h) Sup fraction 882 The University of Tokyo 2004-11-03 [Tiling Array] rikDacFC6 (GPL347) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Time Course Experiment after HO induction. Time (4h) Sup fraction description:Time course experiment after HO induction (4h). Sup fraction used for normalization of GSM34578.
10 GSM34215 Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp1 8,441 The University of Tokyo 2004-10-30 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S.cerevisiae title:Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp1 description:0 hour after HO induction. Chromatin-immunoprecipitation fraction by Scc1. 1st.
11 GSM34227 Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp2 8,441 The University of Tokyo 2004-10-31 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Binding Profile of Scc1 on chr3,4,5, and 6 (0h after induction) Exp2 description:0h after HO induction. Chromatin-immunoprecipitation by Scc1.
12 GSM34232 Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp1 8,441 The University of Tokyo 2004-10-31 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp1 description:After 4h of HO induction. Scc1 chromatin -immunoprecipitation fraction. Exp1.
13 GSM34233 Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp2 8,441 The University of Tokyo 2004-10-31 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Binding Profile of Scc1 on chr3,4,5, and 6 (4h after induction) Exp2 description:After 4h of HO induction. Scc1 chromatin -immunoprecipitation fraction. Exp2.
14 GSM34569 Sup fraction after ChIP (0h) 8,441 The University of Tokyo 2004-11-03 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after ChIP (0h) description:Sup fraction (0h) used for the normalization of GSM34215 and GSM34227.
15 GSM34570 Sup fraction after ChIP (4h) 8,441 The University of Tokyo 2004-11-03 [Tiling Array] SC3456a520015F (GPL1280) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:S. cerevisiae title:Sup fraction after ChIP (4h) description:Sup fraction (4h) used for the normalization of GSM34232 and GSM34233.
16 GSM37581 ENCODE: AcH3-IMR90 Rep1 25,392 Ludwig Institute for Cancer Research 2004-12-14 [Tiling Array] RenLab ENCODE PCR tiling array (GPL1454) genomic Homo sapiens
Homo sapiens
lung ENCODE: AcH3-IMR90 Rep1
17 GSM37588 ENCODE: AcH3-IMR90 Rep2 25,392 Ludwig Institute for Cancer Research 2004-12-14 [Tiling Array] RenLab ENCODE PCR tiling array (GPL1454) genomic Homo sapiens
Homo sapiens
lung ENCODE: AcH3-IMR90 Rep2
18 GSM37589 ENCODE: AcH3-IMR90 Rep3 25,392 Ludwig Institute for Cancer Research 2004-12-14 [Tiling Array] RenLab ENCODE PCR tiling array (GPL1454) genomic Homo sapiens
Homo sapiens
lung ENCODE: AcH3-IMR90 Rep3
19 GSM37590 ENCODE: MeH3K4-IMR90 Rep1 25,392 Ludwig Institute for Cancer Research 2004-12-14 [Tiling Array] RenLab ENCODE PCR tiling array (GPL1454) genomic Homo sapiens
Homo sapiens
lung ENCODE: MeH3K4-IMR90 Rep1
20 GSM37591 ENCODE: MeH3K4-IMR90 Rep2 25,392 Ludwig Institute for Cancer Research 2004-12-14 [Tiling Array] RenLab ENCODE PCR tiling array (GPL1454) genomic Homo sapiens
Homo sapiens
lung ENCODE: MeH3K4-IMR90 Rep2
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