Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(45)		   flower/sexual organ
(116)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(10,131)		   all
(21,846)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM100041 S.cerevisiae Tec1::13myc chIP chip replicate 1 (Slide 42138) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Tec1::13myc 825/6 L1 title:S.cerevisiae Tec1::13myc chIP chip replicate 1 (Slide 42138) description:S.cerevisiae Tec1::13myc chIP chip replicate 1
2 GSM100042 S.cerevisiae Tec1::13myc chIP chip replicate 2 (slide 42141) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:825/6 L1 Tec1::13myc title:S.cerevisiae Tec1::13myc chIP chip replicate 2 (slide 42141) description:S.cerevisiae Tec1::13myc chIP chip replicate 2
3 GSM100043 S.cerevisiae Tec1::13myc chIP chip replicate 3 (Slide 42917) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Tec1::13myc 825/6 L1 title:S.cerevisiae Tec1::13myc chIP chip replicate 3 (Slide 42917) description:S.cerevisiae Tec1::13myc chIP chip replicate 1
4 GSM100044 S.cerevisiae Ste12::13myc chIP chip replicate 1 (Slide 42415) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Ste12::13myc 825/6 L1 title:S.cerevisiae Ste12::13myc chIP chip replicate 1 (Slide 42415) description:S.cerevisiae Ste12::13myc chIP chip replicate 1
5 GSM100045 S.cerevisiae Ste12::13myc chIP chip replicate 2 (slide 42101) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:825/6 L1 Ste12::13myc title:S.cerevisiae Ste12::13myc chIP chip replicate 2 (slide 42101) description:S.cerevisiae Ste12::13myc chIP chip replicate 2
6 GSM100046 S.cerevisiae Ste12::13myc chIP chip replicate 3 (Slide 42196) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Ste12::13myc 825/6 L1 title:S.cerevisiae Ste12::13myc chIP chip replicate 3 (Slide 42196) description:S.cerevisiae Ste12::13myc chIP chip replicate 3
7 GSM100047 S.cerevisiae Sok2::13myc chIP chip replicate 1 (Slide 39907) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Sok2::13myc 825/6 L1 title:S.cerevisiae Sok2::13myc chIP chip replicate 1 (Slide 39907) description:S.cerevisiae Sok2::13myc chIP chip replicate 1
8 GSM100048 S.cerevisiae Sok2::13myc chIP chip replicate 2 (slide 40348) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:825/6 L1 Sok2::13myc title:S.cerevisiae Sok2::13myc chIP chip replicate 2 (slide 40348) description:S.cerevisiae Sok2::13myc chIP chip replicate 2
9 GSM100049 S.cerevisiae Sok2::13myc chIP chip replicate 1 (Slide 40345) 303,921 The Australian Wine Research Institute 2006-03-13 [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Sok2::13myc 825/6 L1 title:S.cerevisiae Sok2::13myc chIP chip replicate 1 (Slide 40345) description:S.cerevisiae Sok2::13myc chIP chip replicate 1
10 GSM1005484 AB1791 H3 N2 L3 Hybridization Rep.1 extraction1_array1 0 Ontario Institute for Cancer Research 2012-09-18 [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) genomic Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:AB1791_H3_N2_L3 channel_1 input DNA AB1791_H3_N2_L3 channel_2 ChIP DNA title:AB1791 H3 N2 L3 Hybridization Rep.1 extraction1_array1 description:channel ch1 is input DNA; channel ch2 is ChIP DNA; Antibody information listed below: official name: C. elegans AB1791 H3 rabbit polyclonal antibody;target name: Histone H3;host: Rabbit;antigen: Synthetic peptide conjugated to KLH derived from within residues 100 to the C-terminus of Human Histone H3;clonal: Polyclonal;purified: Affinity;company: Abcam;catalog: AB1791;short description: An affinity purified rabbit polyclonal antibody to H3 obtained from Abcam (H3-AB1791);used for ChIP.
11 GSM1005485 AB1791 H3 N2 L3 Hybridization Rep.2 extraction2_array1 0 Ontario Institute for Cancer Research 2012-09-18 [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) genomic Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:AB1791_H3_N2_L3 channel_1 input DNA AB1791_H3_N2_L3 channel_2 ChIP DNA title:AB1791 H3 N2 L3 Hybridization Rep.2 extraction2_array1 description:channel ch1 is input DNA; channel ch2 is ChIP DNA; Antibody information listed below: official name: C. elegans AB1791 H3 rabbit polyclonal antibody;target name: Histone H3;host: Rabbit;antigen: Synthetic peptide conjugated to KLH derived from within residues 100 to the C-terminus of Human Histone H3;clonal: Polyclonal;purified: Affinity;company: Abcam;catalog: AB1791;short description: An affinity purified rabbit polyclonal antibody to H3 obtained from Abcam (H3-AB1791);used for ChIP.
12 GSM1005486 HPL2 N2 L3 Hybridization Rep.1 array 0 Ontario Institute for Cancer Research 2012-09-18 [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) genomic Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:FP00001_HPL2_N2_L3 channel_1 ChIP DNA FP00001_HPL2_N2_L3 channel_2 input DNA title:HPL2 N2 L3 Hybridization Rep.1 array description:channel ch1 is ChIP DNA; Antibody information listed below: official name: FP00001 HPL2;target name: HPL-2;host: Rabbit;antigen: C-terminus;clonal: Polyclonal;purified: Affinity;company: Lab;catalog: Francesca Palladino;short description: An affinity purified rabbit polyclonal antibody to HPL-2 (C-terminus) obtained from Francesca Palladino was used for ChIP. channel ch2 is input DNA;
13 GSM1005487 HPL2 N2 L3 Hybridization Rep.2 array 0 Ontario Institute for Cancer Research 2012-09-18 [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) genomic Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:FP00001_HPL2_N2_L3 channel_1 ChIP DNA FP00001_HPL2_N2_L3 channel_2 input DNA title:HPL2 N2 L3 Hybridization Rep.2 array description:channel ch1 is ChIP DNA; Antibody information listed below: official name: FP00001 HPL2;target name: HPL-2;host: Rabbit;antigen: C-terminus;clonal: Polyclonal;purified: Affinity;company: Lab;catalog: Francesca Palladino;short description: An affinity purified rabbit polyclonal antibody to HPL-2 (C-terminus) obtained from Francesca Palladino was used for ChIP. channel ch2 is input DNA;
14 GSM1009010 TYLCV infected resistant line R Ri:0 65645702 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:TYLCV infected resistance line title:TYLCV infected resistant line R Ri:0 65645702
15 GSM1009011 non-infected resistant line R R0:0 65645802 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:non-infected resistance line title:non-infected resistant line R R0:0 65645802
16 GSM1009012 TYLCV infected LeHT1-silenced resistant line R Ri: TRV HEX 65645902 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:TYLCV infected LeHT1-silenced resistance line title:TYLCV infected LeHT1-silenced resistant line R Ri: TRV HEX 65645902 description:Resistance plants where LeHT1 has been silenced using Tobacco rattle virus-induced gene silencing (TRV VIGS).
17 GSM1009013 non-infected LeHT1-silenced resistant line R R0: TRV HEX 65646002 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:non-infected LeHT1-silenced resistance line title:non-infected LeHT1-silenced resistant line R R0: TRV HEX 65646002 description:Resistance plants where LeHT1 has been silenced using Tobacco rattle virus-induced gene silencing (TRV VIGS).
18 GSM1009014 TYLCV infected susceptible line S Si:0 65838805 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:TYLCV infected susceptible line title:TYLCV infected susceptible line S Si:0 65838805
19 GSM1009015 non-infected LeHT1-silenced resistant line R R0: TRV HEX 65838905 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:non-infected LeHT1-silenced resistance line title:non-infected LeHT1-silenced resistant line R R0: TRV HEX 65838905 description:Resistance plants where LeHT1 has been silenced using Tobacco rattle virus-induced gene silencing (TRV VIGS).
20 GSM1009016 TYLCV infected resistant line R Ri:0 65839005 33,809 Hebrew University of Jerusalem 2012-09-25 [Tiling Array] Solanum lycopersicum 385K 4-plex array 4x72K array (GPL16103) RNA Solanum lycopersicum
Solanum lycopersicum		 unclassified source_name:TYLCV infected resistance line title:TYLCV infected resistant line R Ri:0 65839005
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