Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(6,763)		   Primates
(4)		   Rodents
(3,704)		   Mammals
(141)		   Vertebrates
(405)		   Invertebrates
(835)		   Plants
(1,401)		   Bacteria
(717)		   Viruses
(12)		   Phages
(0)		   Unclassified
(14)		   All
(13,996)		  
  SAGE NlaIII
(219)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(5)		   GeneChip
(6,764)		   Tiling Array
(226)		   cDNA Array
(3,605)		   Oligo Array
(3,107)		   Bead Array
(64)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(5)		   All
(13,996)		  
  brain
(11)		   blood
(0)		   connective
(9)		   reproductive
(10)		   muscular
(0)		   digestive
(42)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(16)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(24)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(18)		   unclassified
(96)		   all
(226)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM107979 Epe1_wt 43,568 NCI 2006-05-04 [Tiling Array] NCI Pombe 44K v1.0 (GPL2558) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe		 unclassified source_name:Schizosaccharomyces pombe whole cell extract (WCE) genomic DNA Schizosaccharomyces pombe chromatin immunoprecipitated DNA title:Epe1_wt description:Schizosaccharomyces pombe cells, Epe1 ChIP(chromatin immunoprecipitation)-on-chip
2 GSM109610 Salmonella typhimurium 14028 Hns ChIP-Chip rep 1 382,864 Vaccine Research Institute of San Diego 2006-05-19 [Tiling Array] SKCC Salmonella 380K tiling array (GPL3786) genomic Salmonella
Salmonella		 unclassified source_name:Salmonella typhimurium 14028 title:Salmonella typhimurium 14028 Hns ChIP-Chip rep 1 description:The array was hybridized with genomic DNA and hns-bound DNA from a chromatin immunoprecipitation.
3 GSM109611 Salmonella typhimurium 14028 Hns ChIP-Chip rep 2 382,864 Vaccine Research Institute of San Diego 2006-05-19 [Tiling Array] SKCC Salmonella 380K tiling array (GPL3786) genomic Salmonella
Salmonella		 unclassified source_name:Salmonella typhimurium 14028 title:Salmonella typhimurium 14028 Hns ChIP-Chip rep 2 description:The array was hybridized with genomic DNA and hns-bound DNA from a chromatin immunoprecipitation.
4 GSM106580 Yeast FAIRE_BY4741 #3_Oligo Array Rando3 (dye swap) 24,960 UNC-Chapel Hill 2006-04-25 [Tiling Array] Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard) (GPL3703) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:fixed BY4741 #3 genomic unfixed BY4741 title:Yeast FAIRE_BY4741 #3_Oligo Array Rando3 (dye swap) description:FAIRE_BY4741 #3_Oligo Array Rando3 (dye swap)
5 GSM106581 Yeast FAIRE_BY4741 #2_Oligo Array Rando4 (dye swap) 24,960 UNC-Chapel Hill 2006-04-25 [Tiling Array] Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard) (GPL3703) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:fixed BY4741 #2 genomic unfixed BY4741 title:Yeast FAIRE_BY4741 #2_Oligo Array Rando4 (dye swap) description:FAIRE_BY4741 #2_Oligo Array Rando4 (dye swap)
6 GSM106582 Yeast FAIRE_BY4741 #3_Oligo Array Rando5 24,960 UNC-Chapel Hill 2006-04-25 [Tiling Array] Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard) (GPL3703) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:genomic unfixed BY4741 fixed BY4741 #3 title:Yeast FAIRE_BY4741 #3_Oligo Array Rando5 description:FAIRE_BY4741 #3_Oligo Array Rando5
7 GSM106583 Yeast FAIRE_BY4741 #1_Oligo Array Rando1 24,960 UNC-Chapel Hill 2006-04-25 [Tiling Array] Lieb Lab at UNC-CH_Yeast Oligo Tiling Array from (RandoLab_Harvard) (GPL3703) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:genomic unfixed BY4741 fixed BY4741 #1 title:Yeast FAIRE_BY4741 #1_Oligo Array Rando1 description:FAIRE_BY4741 #1_Oligo Array Rando1
8 GSM108404 Smc6 distribution in G1 phase 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Smc6 distribution in G1 phase description:Smc6 distribution in G1 phase on chromosome VI
9 GSM108405 Sup fraction for normalization of Smc6 G1 phase data 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Smc6 G1 phase data description:Smc6 distribution in G1 phase on chromosome VI
10 GSM108406 Smc6 distribution in S phase 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Smc6 distribution in S phase description:Smc6 distribution in S phase on chromosome VI
11 GSM108407 Sup fraction for normalization of Smc6 S phase data 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Smc6 S phase data description:Sup fraction for the normalization of Smc6 distribution in S phase on chromosome VI
12 GSM108408 Nse1 distribution in G1 phase 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Nse1 distribution in G1 phase description:Nse1 distribution in G1 phase on chromosome VI
13 GSM108409 Sup fraction for normalization of Nse1 G1 phase data 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Nse1 G1 phase data description:Nse1 distribution in G1 phase on chromosome VI
14 GSM108410 Nse1 distribution in S phase 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Nse1 distribution in S phase description:Nse1 distribution in S phase on chromosome VI
15 GSM108411 Sup fraction for normalization of Nse1 S phase data 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Nse1 S phase data description:Sup fraction for normalization of Nse1 S phase data
16 GSM108412 Nse1 distribution in G2/M phase 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Nse1 distribution in G2/M phase description:Nse1 distribution in G2/M phase on chromosome VI
17 GSM108413 Sup fraction for normalization of Nse1 G2/M phase data 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Nse1 G2/M phase data description:Sup fraction for normalization of Nse1 G2/M phase data
18 GSM108414 Smc6 distribution after break induction in G2/M phase_time 0 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Smc6 distribution after break induction in G2/M phase_time 0 description:Smc6 distribution after break induction in G2/M phase on chromosome VI (time 0)
19 GSM108415 Sup fraction for normalization of Smc6 G2/M phase timecourse data_time 0 and 20 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:SUP fraction after IP (identical to WCE fraction) title:Sup fraction for normalization of Smc6 G2/M phase timecourse data_time 0 and 20 description:Sup fraction for normalization of Smc6 distribution data after DSB induction at G2/M phase data (time 0 and 20). Also used for normalization of Nse4 distribution data.
20 GSM108416 Smc6 distribution after break induction in G2/M phase_time 20 5,028 The University of Tokyo 2006-05-11 [Tiling Array] ChromosomeVI tiling array (rikDACF) (GPL3722) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Chromatin Immuno-precipitated DNA title:Smc6 distribution after break induction in G2/M phase_time 20 description:Smc6 distribution after break induction in G2/M phase on chromosome VI (time 20)
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