Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(377,145)		   Tiling Array
(21,846)		   cDNA Array
(103,476)		   Oligo Array
(239,584)		   Bead Array
(106,999)		   Protein Array
(5)		   Antibody
(1,152)		   RT-PCR
(3,959)		   HT-Seq
(35,574)		   Other
(6,909)		   All
(898,944)		  
  brain
(1,167)		   blood
(2,171)		   connective
(1,144)		   reproductive
(704)		   muscular
(183)		   digestive
(439)		   liver
(562)		   lung
(284)		   urinary
(421)		   endo/exo-crine
(1,270)		   embryo
(832)		   adult aerial structure
(359)		   young aerial structure
(521)		   root
(111)		   meristem/growing tissue
(45)		   flower/sexual organ
(116)		   seed/fruit/grain
(119)		   pooled
(1,267)		   unclassified
(10,131)		   all
(21,846)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM624679 ZW5.BG3 extraction4_array1 0 Ontario Institute for Cancer Research 2010-11-17 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:ZW5.BG3 extraction4_array1 channel_1 title:ZW5.BG3 extraction4_array1 description:channel ch1 is input DNA;
2 GSM624678 ZW5.BG3 extraction3_array1 0 Ontario Institute for Cancer Research 2010-11-17 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:ZW5.BG3 extraction3_array1 channel_1 title:ZW5.BG3 extraction3_array1 description:channel ch1 is ChIP DNA; Antibody information listed below: official name: ZW5;target name: ZW5;host: Rabbit;antigen: GST fusion of aa 5-110 of ZW5 protein;clonal: Polyclonal;purified: Affinity;company: Lab;catalog: Vincent Pirrotta;short description: Rabbit antibody raised against GST fusion protein containing Zeste white 5 sequence.;
3 GSM624677 ZW5.BG3 extraction2_array1 0 Ontario Institute for Cancer Research 2010-11-17 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:ZW5.BG3 extraction2_array1 channel_1 title:ZW5.BG3 extraction2_array1 description:channel ch1 is input DNA;
4 GSM624676 ZW5.BG3 extraction1_array1 0 Ontario Institute for Cancer Research 2010-11-17 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:ZW5.BG3 extraction1_array1 channel_1 title:ZW5.BG3 extraction1_array1 description:channel ch1 is ChIP DNA; Antibody information listed below: official name: ZW5;target name: ZW5;host: Rabbit;antigen: GST fusion of aa 5-110 of ZW5 protein;clonal: Polyclonal;purified: Affinity;company: Lab;catalog: Vincent Pirrotta;short description: Rabbit antibody raised against GST fusion protein containing Zeste white 5 sequence.;
5 GSM1096878 ZW5 2-4 hr OR Embryo D.melanogaster Input Rep2 0 Ontario Institute for Cancer Research 2013-03-12 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 embryo ZW5 2-4 hr OR Embryo D.melanogaster Input Rep2
6 GSM1096877 ZW5 2-4 hr OR Embryo D.melanogaster Input Rep1 0 Ontario Institute for Cancer Research 2013-03-12 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 embryo ZW5 2-4 hr OR Embryo D.melanogaster Input Rep1
7 GSM1096880 ZW5 2-4 hr OR Embryo D.melanogaster ChIP Rep2 0 Ontario Institute for Cancer Research 2013-03-12 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 embryo ZW5 2-4 hr OR Embryo D.melanogaster ChIP Rep2
8 GSM1096879 ZW5 2-4 hr OR Embryo D.melanogaster ChIP Rep1 0 Ontario Institute for Cancer Research 2013-03-12 [Tiling Array] [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array (GPL6629) genomic Drosophila melanogaster
Drosophila melanogaster		 embryo ZW5 2-4 hr OR Embryo D.melanogaster ChIP Rep1
9 GSM69200 ZR-75-30 104,544 BCCRC 2005-08-09 [Tiling Array] BCCRC Lam SMRT array 32k (GPL2043) genomic Homo sapiens
Homo sapiens		 breast ZR-75-30
10 GSM155214 ZR-75-1 Breast cancer cell line 31,865 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-01-12 [Tiling Array] SWEGENE_BAC_32K_Full (GPL4723) genomic Homo sapiens
Homo sapiens		 breast ZR-75-1 Promega reference male DNA
11 GSM739668 Zip1, 4h meiosis 0 University of Vienna, MFPL 2011-06-09 [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Zip1 ChIP with anti -Zip1 antibody zip1 deletion title:Zip1, 4h meiosis
12 GSM307387 Zilberman Methylations IP/total DNA WT6 (WT sample 1) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonicated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylations IP/total DNA WT6 (WT sample 1) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
13 GSM307391 Zilberman Methylation IP/total DNA WT6-III (WT sample 3) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonciated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylation IP/total DNA WT6-III (WT sample 3) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
14 GSM307390 Zilberman Methylation IP/total DNA WT6-II (pie1-5 sample 3) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonciated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylation IP/total DNA WT6-II (pie1-5 sample 3) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
15 GSM307386 Zilberman Methylation IP/total DNA PIE6-in (pie1-5 sample 1) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonicated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylation IP/total DNA PIE6-in (pie1-5 sample 1) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
16 GSM307389 Zilberman Methylation IP/total DNA PIE6-III (WT sample 2) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonicated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylation IP/total DNA PIE6-III (WT sample 2) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
17 GSM307388 Zilberman Methylation IP/total DNA PIE6-II (pie1-5 sample 2) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Sonicated total genomic DNA Immunoprecipitated methylated genomic DNA title:Zilberman Methylation IP/total DNA PIE6-II (pie1-5 sample 2) description:Antibody-based methylation mapping of the Arabidopsis genome. Genomic DNA was extracted from wild type, met1-6 or pie1-5 lines in the Columbia background. The values are log2 signal ratios of immunoprecipitated DNA /input DNA.
18 GSM307385 Zilberman Methylation IP/total DNA 1882402 (met1-6 root-1) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 root Zilberman Methylation IP/total DNA 1882402 (met1-6 root-1)
19 GSM307384 Zilberman Methylation IP/total DNA 1881802 (WT root-1) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 root Zilberman Methylation IP/total DNA 1881802 (WT root-1)
20 GSM307383 Zilberman Methylation IP/total DNA 1864302 (met1-6 root-2) 382,178 Fred Hutchinson Cancer Research Center 2008-07-24 [Tiling Array] FHCRC Arabidopsis Tiling Array (GPL3371) genomic Arabidopsis thaliana
Arabidopsis thaliana		 root Zilberman Methylation IP/total DNA 1864302 (met1-6 root-2)
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