Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(1,683)		   SAGE RsaI
(3)		   SAGE Sau3A
(54)		   MPSS
(439)		   GeneChip
(391,468)		   Tiling Array
(22,222)		   cDNA Array
(104,397)		   Oligo Array
(247,270)		   Bead Array
(112,023)		   Protein Array
(5)		   Antibody
(1,160)		   RT-PCR
(4,486)		   HT-Seq
(39,106)		   Other
(7,515)		   All
(931,947)		  
  brain
(1,173)		   blood
(2,212)		   connective
(1,144)		   reproductive
(730)		   muscular
(183)		   digestive
(439)		   liver
(562)		   lung
(284)		   urinary
(421)		   endo/exo-crine
(1,270)		   embryo
(852)		   adult aerial structure
(367)		   young aerial structure
(521)		   root
(111)		   meristem/growing tissue
(45)		   flower/sexual organ
(116)		   seed/fruit/grain
(119)		   pooled
(1,279)		   unclassified
(10,394)		   all
(22,222)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1110206 infected human umbilical vein endothelial cell (HUVEC) 13,484 Novartis Institutes for BioMedical Research 2013-03-28 [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) RNA unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 vein HUVEC stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic.
2 GSM1110208 infected human aortic endothelial cell (HAEC) 13,484 Novartis Institutes for BioMedical Research 2013-03-28 [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) RNA unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 artery/aorta infected human aortic endothelial cell (HAEC)
3 GSM512652 SLK stably infected with rKSHV.219 replicate 1 13,746 UCSF 2010-02-22 [Tiling Array] KSHV tiling microarray AMADID: 017577 (GPL10083) RNA unidentified
unidentified		 vein SLK cells stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, SLK, HFF, HUVEC, TIME), both infected and uninfected.
4 GSM512653 SLK stably infected with rKSHV.219 replicate 2 13,746 UCSF 2010-02-22 [Tiling Array] KSHV tiling microarray AMADID: 017577 (GPL10083) RNA unidentified
unidentified		 vein SLK cells stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, SLK, HFF, HUVEC, TIME), both infected and uninfected.
5 GSM512656 HFF stably infected with rKSHV.219 replicate 1 13,746 UCSF 2010-02-22 [Tiling Array] KSHV tiling microarray AMADID: 017577 (GPL10083) RNA unidentified
unidentified		 vein HFF cells stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, SLK, HFF, HUVEC, TIME), both infected and uninfected.
6 GSM512657 HFF stably infected with rKSHV.219 replicate 2 13,746 UCSF 2010-02-22 [Tiling Array] KSHV tiling microarray AMADID: 017577 (GPL10083) RNA unidentified
unidentified		 vein HFF cells stably infected with rKSHV.219 Common reference: mix of several different cell types (BJAB, BCBL, SLK, HFF, HUVEC, TIME), both infected and uninfected.
7 GSM419472 Sir3 H3d4-30 0 UCLA 2009-06-22 [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 peripheral blood Sir3 ChIP in H3 del 4-30 yeast
8 GSM419475 Rap1 H3d4-30 0 UCLA 2009-06-22 [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae		 peripheral blood Rap1 ChIP in H3 del 4-30 yeast
9 GSM635865 BAPHK_cDNA1 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
10 GSM635866 BAPHK_cDNA2 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
11 GSM635883 BAPHK_cDNA3 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
12 GSM635902 BAPHK_R15 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
13 GSM635903 BAPHK_R16 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
14 GSM636914 cDNA_DNAref1 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
15 GSM636915 cDNA_DNAref2 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
16 GSM636916 cDNA_DNAref3 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
17 GSM636917 RNA_DNAref1 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
18 GSM636918 RNA_DNAref2 Genomic DNA 409,807 The Forsyth Institute 2010-12-08 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) genomic Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
19 GSM768217 BAPHK_R15 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-27 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
20 GSM768219 BAPHK_R16 transcriptome profile SVR 409,807 The Forsyth Institute 2011-07-27 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
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