Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6314 NCI Human Solexa Platform 14814K 14,814,587 National Cancer Institute 2007-12-20 not applicable Homo sapiens
Homo sapiens		 HT Sequencing other, NCI Human Solexa Platform 14814K,
2 GPL6628 Affymetrix non-commercial Mouse Tiling 1.0 Array 16 13,939,854 Affymetrix, Inc. 2008-03-19 Affymetrix Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, Affymetrix non-commercial Mouse Tiling 1.0 Array 16,
3 GPL7003 MPIMG-Human-Solexa sequencing HEK PolIIa ChIP 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 MPIMG Homo sapiens
Homo sapiens		 HT Sequencing other, MPIMG-Human-Solexa sequencing HEK PolIIa ChIP, Sequencing was carried out using the 1G Illumina Genome Analyser (Solexa)
4 GPL6891 S. cerevisiae Tiling1.0R Array SNPScanner compatible 12,070,743 Cancer Research UK London Research Institute 2008-05-22 Affymetrix Saccharomyces cerevisiae
Saccharomyces cerevisiae		 GeneChip in situ oligonucleotide, S. cerevisiae Tiling1.0R Array SNPScanner compatible, GEO platform for S.cerevisiae Tiling1.0R Sc03b_MR_v04 containing per base pair features compatible with SNPScanner output. Gresham, D. et al. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 311, 1932-1936 (2006).
5 GPL7004 MPIMG-Human-Solexa sequencing-HEK and B cell RNA 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 MPIMG Homo sapiens
Homo sapiens		 HT Sequencing other, MPIMG-Human-Solexa sequencing-HEK and B cell RNA, Sequencing was carried out using the 1G Illumina Genome Analyser (Solexa)
6 GPL6946 MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) 11,205,620 UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 HT Sequencing other, MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa),
7 GPL6957 SAGE:17:NlaIII:Solanum phureja 7,625,793 2008-06-13 Solanum phureja
Solanum phureja		 SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Solanum phureja, This is a virtual platform for SAGE libraries generated for Solanum phureja using NlaIII as an anchor enzyme.
8 GPL6705 Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA) 7,109,274 Delaware Biotechnology Institute 2008-04-08 Arabidopsis thaliana
Arabidopsis thaliana		 Other other, Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA),
9 GPL7059 Whitehead-Young-Mouse-Solexa (small RNA sequences) 6,901,774 Whitehead Institute 2008-07-16 not applicable Mus musculus
Mus musculus		 HT Sequencing other, Whitehead-Young-Mouse-Solexa (small RNA sequences), Solexa sequencing Data generated at Center for Advanced Genome Technology at Whitehead Institute using Genome Analyzer manufactured by Solexa/Illumina (Sequencing by Synthesis)
10 GPL6660 Nsp copy number (CN) array (ds2) 6,276,448 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds2), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
11 GPL1485 SAGE:17:NlaIII:Homo sapiens 6,221,157 2004-10-07 Homo sapiens
Homo sapiens		 SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Homo sapiens, This is a virtual platform for longSAGE 17 libraries generated for Homo sapiens using NlaIII as an anchor enzyme. Platform_anchor: NlaIII
12 GPL1979 AtTile1F to Arabidopsis Tiling 1.0F 6,184,720 The Salk Institute 2005-04-20 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, AtTile1F to Arabidopsis Tiling 1.0F, Affymetrix Whole Genome Tiling Array Chip designed by the Salk Institute and Affymetrix.
13 GPL1980 AtTile1R to Arabidopsis Tiling 1.0R 6,184,720 The Salk Institute 2005-04-20 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, AtTile1R to Arabidopsis Tiling 1.0R, Affymetrix Whole Genome Tiling Array Chip designed by the Salk Institute and Affymetrix.
14 GPL6659 Nsp copy number (CN) array (ds1) 6,121,086 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds1), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
15 GPL7071 Small RNA SBS signatures indentified from maize using Illumina's SBS technnology 5,386,553 University of Delaware 2008-07-19 Zea mays
Zea mays		 Other other, Small RNA SBS signatures indentified from maize using Illumina's SBS technnology,
16 GPL6817 SKI D. melanogaster small RNA sequenced by Solexa 5,222,148 Sloan-Kettering Institute 2008-05-05 Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, SKI D. melanogaster small RNA sequenced by Solexa,
17 GPL7026 Human Promoter Array 1.0R - NCBI build_35 5,150,820 University of Tokyo 2008-07-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Human Promoter Array 1.0R - NCBI build_35, For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.
18 GPL5295 AFFY Human Phase3 v1.0 - C62 4,919,563 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C62,
19 GPL5249 AFFY Human Phase3 v1.0 - C16 4,422,670 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C16,
20 GPL5267 AFFY Human Phase3 v1.0 - C34 4,320,474 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C34,
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