Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(33)		   Primates
(0)		   Rodents
(25)		   Mammals
(2)		   Vertebrates
(4)		   Invertebrates
(17)		   Plants
(43)		   Bacteria
(7)		   Viruses
(2)		   Phages
(1)		   Unclassified
(1)		   All
(135)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(4)		   Tiling Array
(6)		   cDNA Array
(70)		   Oligo Array
(50)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(1)		   HT-Seq
(0)		   Other
(0)		   All
(135)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1789 Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 737,680 Affymetrix, Inc. 2005-01-10 Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34, 21bp resolution oligonucleotide tiling array. Annotation in this record based on NCBI build 34.
2 GPL1796 Chlamy 36mer array 390,886 NASA Ames Research Center 2005-01-14 Chlamydomonas reinhardtii
Chlamydomonas reinhardtii		 Oligo Array spotted oligonucleotide, Chlamy 36mer array, 389,285 different 36-mer oligonucleotide probes were selected from the V2 genome sequence of Chlamydomonas reinhardtii that was available from the JGI website (ftp://ftp.jgi-psf.org/pub/JGI_data/Chlamy/chlre2/) in February 2004. The probes are covering predicted proteins and intergenic regions. The selected oligonucleotides were synthesized on a glass-based array using an in situ maskless photolithographic synthesis device.
3 GPL1842 ATH Whole genome chip 3 390,734 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH Whole genome chip 3, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
4 GPL1851 ATH whole genome chip 11 390,734 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 11, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
5 GPL1840 ATH Whole genome chip 1 390,732 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH Whole genome chip 1, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
6 GPL1841 ATH Whole genome chip 2 390,732 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH Whole genome chip 2, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
7 GPL1849 ATH whole genome chip 9 390,732 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 9, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
8 GPL1850 ATH whole genome chip 10 390,732 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 10, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
9 GPL1853 ATH whole genome chip 13 390,732 NASA Ames Research Center 2005-02-05 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 13, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
10 GPL1845 ATH whole genome chip 5 390,730 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 5, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
11 GPL1846 ATH whole genome chip 6 390,730 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 6, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
12 GPL1848 ATH whole genome chip 8 390,730 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 8, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
13 GPL1852 ATH whole genome chip 12 390,730 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 12, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
14 GPL1844 ATH whole genome chip 4 390,728 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 4, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
15 GPL1933 Tiling microarray analysis of rice japonica chromosome 10(forward strand) 375,140 Yale University 2005-03-29 Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, Tiling microarray analysis of rice japonica chromosome 10(forward strand), Oligo nucleotides 36mer in length are designed to represent sense and antisense strands of the nonrepetitive DNA of the japonica and indica rice chromosome 10. The probes were selected from the April 12, 2004 japonica genome sequence (TIGR rice annotation 2.0) and the August 1, 2003 indica sequence from BGI. Microarrays containing these oligos are synthesized on glass with Expedite DNA synthesizers (Applied Biosystems, Foster City, CA) in conjunction with Maskless Array Synthesis units (NimbleGen Systems, Madison, WI).
16 GPL1934 Tiling microarray analysis of rice japonica chromosome 10(reverse strand) 375,140 Yale University 2005-03-29 Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, Tiling microarray analysis of rice japonica chromosome 10(reverse strand), Oligo nucleotides 36mer in length are designed to represent sense and antisense strands of the nonrepetitive DNA of the japonica and indica rice chromosome 10. The probes were selected from the April 12, 2004 japonica genome sequence (TIGR rice annotation 2.0) and the August 1, 2003 indica sequence from BGI. Microarrays containing these oligos are synthesized on glass with Expedite DNA synthesizers (Applied Biosystems, Foster City, CA) in conjunction with Maskless Array Synthesis units (NimbleGen Systems, Madison, WI).
17 GPL1937 Tiling microarray analysis of rice indica chromosome 10 (forward strand) 336,307 Yale University 2005-03-31 Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, Tiling microarray analysis of rice indica chromosome 10 (forward strand), Oligo nucleotides 36mer in length are designed to represent sense and antisense strands of the nonrepetitive DNA of the japonica and indica rice chromosome 10. The probes were selected from the April 12, 2004 japonica genome sequence (TIGR rice annotation 2.0) and the August 1, 2003 indica sequence from BGI. Microarrays containing these oligos are synthesized on glass with Expedite DNA synthesizers (Applied Biosystems, Foster City, CA) in conjunction with Maskless Array Synthesis units (NimbleGen Systems, Madison, WI). Keywords = transcription Keywords = gene expression Keywords = rice
18 GPL1938 Tiling microarray analysis of rice indica chromosome 10 (reverse strand) 336,307 Yale University 2005-03-31 Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, Tiling microarray analysis of rice indica chromosome 10 (reverse strand), Oligo nucleotides 36mer in length are designed to represent sense and antisense strands of the nonrepetitive DNA of the japonica and indica rice chromosome 10. The probes were selected from the April 12, 2004 japonica genome sequence (TIGR rice annotation 2.0) and the August 1, 2003 indica sequence from BGI. Microarrays containing these oligos are synthesized on glass with Expedite DNA synthesizers (Applied Biosystems, Foster City, CA) in conjunction with Maskless Array Synthesis units (NimbleGen Systems, Madison, WI). Keywords = transcription Keywords = gene expression Keywords = rice
19 GPL1847 ATH whole genome chip 7 244,839 NASA Ames Research Center 2005-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array in situ oligonucleotide, ATH whole genome chip 7, 36-mer probes covering about every 10 bps of Arabidopsis Thaliana genome
20 GPL1829 Rice Genome Oligo Set V1.0 60,727 Operon Biotechnologies 2005-01-27 Oryza sativa
Oryza sativa		 Oligo Array spotted oligonucleotide, Rice Genome Oligo Set V1.0, Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Keywords = Rice Operon
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