Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(56)
  Primates
(0)
  Rodents
(26)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(69)
  Bacteria
(42)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(279)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(8)
  cDNA Array
(21)
  Oligo Array
(156)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(67)
  Other
(0)
  All
(279)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15114 NimbleGen Homo sapiens 2.1M hg18 2,125,410 NCBI/NLM/NIH 2012-01-11 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Homo sapiens 2.1M hg18,
2 GPL15364 NimbleGen Honeybee 2.1M array 1,985,432 JHU 2012-03-20 NimbleGen Apis mellifera
Apis mellifera
Oligo Array in situ oligonucleotide, NimbleGen Honeybee 2.1M array, Annotation based on Baylor College of Medicine Human Genome Sequencing Center honeybee genome assembly Oct 2006 (Amel_4.0)
3 GPL15225 NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH] 713,358 Institute of Biochemistry and Cell Biology,Shanghai Institutes for Biological Sciences,Chinese Academy of Sciences 2012-02-13 Roche NimbleGen Inc. Mus musculus
Mus musculus
Tiling Array in situ oligonucleotide, NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH], Build: MM9
4 GPL15160 NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays (090618_HG18_CpG_Refseq_Prom_MeDIP) 711,712 City Of Hope 2012-01-24 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays (090618_HG18_CpG_Refseq_Prom_MeDIP), Format: 3X720K Source: UCSC Build: HG18, NCBI 36 Probe Length: 50-75mer Median Probe Spacing: 104 090618_HG18_CpG_Refseq_Prom_MeDIP.ndf 090618_HG18_CpG_Refseq_Prom_MeDIP.pos 090618_HG18_CpG_Refseq_Prom_MeDIP.gff 090618_HG18_CpG_Refseq_Prom_MeDIP_HX3.ncd
5 GPL15106 [hjay] Affymetrix GeneChip Human HJAY Array 573,410 NCBI/NLM/NIH 2012-01-10 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [hjay] Affymetrix GeneChip Human HJAY Array,
6 GPL15108 Agilent custom 415K mouse CGH [design id 026818] 420,288 UT MD Anderson Cancer Center 2012-01-10 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent custom 415K mouse CGH [design id 026818], Belfer Institute for Applied Cancer Sciences. Custom 2x415K array for mouse array-CGH. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. Probe coordinates are based on genome build UCSC mm9. The ID column represents the Agilent Feature Extraction feature number.
7 GPL15316 Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881 420,288 Texas A&M University 2012-03-06 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris
Oligo Array in situ oligonucleotide, Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881, CanFam2.0 Arrays of this design have barcodes that begin with 16027178 or 2527178. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
8 GPL15117 Agilent-025735 custom 415K mouse CGH (Probe Name version) 413,892 UT MD Anderson Cancer Center 2012-01-11 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-025735 custom 415K mouse CGH (Probe Name version), Belfer Institute for Applied Cancer Sciences. Custom 2x415K array for mouse array-CGH, X/Y chromosomes excluded. Probe coordinates are based on genome build UCSC mm9. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL15058
9 GPL15128 Agilent_026818 custom 415K mouse CGH (Probe Name version) 413,892 UT MD Anderson Cancer Center 2012-01-14 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent_026818 custom 415K mouse CGH (Probe Name version), Belfer Institute for Applied Cancer Sciences. Custom 2x415K array for mouse array-CGH. Probe coordinates are based on genome build UCSC mm9. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL15108
10 GPL15186 Bos taurus QTL of female fertility region Tiling Array 385K Nimblegen 392,936 INRA 2012-02-03 Nimblegen Systems Inc. Bos taurus
Bos taurus
Tiling Array in situ oligonucleotide, Bos taurus QTL of female fertility region Tiling Array 385K Nimblegen, The 385k Fertility Tiling Array was designed in both orientations to cover one of female fertility QTL on chr3. Target regions was gotten from UCSC database on Oct 2007 release (bosTau4). The 385k Fertility Tiling Array contains 171581 forward experimental probes, 171581 reverse experimental probes and 45961 randomly generated probes.
11 GPL15246 NimbleGen P. falciparum 3D7 Whole Genome CGH Array [090317_Plasmodium_3D7_WG_CGH] 385,585 NimbleGen Systems, Inc. 2012-02-16 NimbleGen Plasmodium falciparum
Plasmodium falciparum
Oligo Array in situ oligonucleotide, NimbleGen P. falciparum 3D7 Whole Genome CGH Array [090317_Plasmodium_3D7_WG_CGH], DESIGN_NAME: 090317_Plasmodium_3D7_WG_CGH DESIGN_ID: 9384
12 GPL15252 Klebsiella pneumoniae MGH 78578 Nimblegen 9822 array 379,528 University of California San Diego 2012-02-17 Nimblegen Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Oligo Array in situ oligonucleotide, Klebsiella pneumoniae MGH 78578 Nimblegen 9822 array, Design ID 9822; Order ID 21032; 385K microarray. The .ndf and .ngd files are described below. native array description file: Kp.ndf native array description file: Kp.ngd
13 GPL15086 Agilent-027929 AI_hybridCell_17q21_v3 243,504 University of Washington School of Medicine 2012-01-03 Agilent Technologies Mus musculus
Mus musculus
Oligo Array in situ oligonucleotide, Agilent-027929 AI_hybridCell_17q21_v3, Custom Design for hybing hybrid cells to determine 17q21 breakpoints. Arrays of this design have barcodes that begin with 16027929 or 2527929. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
14 GPL15358 Agilent-015223 Rat Genome CGH Microarray 244A 243,504 NCBI/NLM/NIH 2012-03-16 Agilent Technologies Rattus norvegicus
Rattus norvegicus
Oligo Array in situ oligonucleotide, Agilent-015223 Rat Genome CGH Microarray 244A, Rat Genome CGH Microarray 244A Arrays of this design have barcodes that begin with 16015223 or 2515223. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL15359 Agilent-PEROU-LAB-CUSTOM-HS-244K-CGH-BARCODE20421 243,504 University of North Carolina at Chapel Hill 2012-03-16 Agilent Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-PEROU-LAB-CUSTOM-HS-244K-CGH-BARCODE20421,
16 GPL15237 Agilent-021438 Custom HD-CGH microarray (1x244K) 241,797 Barts & The London School of Medicine & Dentistry 2012-02-15 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-021438 Custom HD-CGH microarray (1x244K), Agilent Custom Human 244K CGH Microarray consisting of 60-mer oligonucleotides mapped to UCSC hg18 human genome (NCBI build 36)
17 GPL15385 Agilent-015618 Lactobacillus plantarum WCFS1 244k tiling array forward strand 241,399 NIZO food research 2012-03-28 Agilent Technologies Lactobacillus plantarum
Lactobacillus plantarum
Tiling Array in situ oligonucleotide, Agilent-015618 Lactobacillus plantarum WCFS1 244k tiling array forward strand,
18 GPL15386 Agilent-015640 Lactobacillus plantarum WCFS1 244k tiling array reverse strand 241,399 NIZO food research 2012-03-28 Agilent Technologies Lactobacillus plantarum
Lactobacillus plantarum
Tiling Array in situ oligonucleotide, Agilent-015640 Lactobacillus plantarum WCFS1 244k tiling array reverse strand,
19 GPL15255 Agilent-014339 Rat genome CGH 185K microarray 184,333 Agilent 2012-02-20 Agilent technologies Rattus norvegicus
Rattus norvegicus
Oligo Array in situ oligonucleotide, Agilent-014339 Rat genome CGH 185K microarray, AMADID:014339 Data table annotations based on genome build RGSC_v3.1, July 2003. ID column is feature number of agilent feature extraction.
20 GPL15180 Agilent-028233 Danio rerio Leiden custom 180k array 180,822 University of Leiden 2012-02-01 Agilent Danio rerio
Danio rerio
Oligo Array in situ oligonucleotide, Agilent-028233 Danio rerio Leiden custom 180k array,
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