Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(817)		   Primates
(5)		   Rodents
(479)		   Mammals
(31)		   Vertebrates
(116)		   Invertebrates
(1,092)		   Plants
(193)		   Bacteria
(87)		   Viruses
(2)		   Phages
(2)		   Unclassified
(7)		   All
(2,834)		  
  SAGE NlaIII
(39)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(620)		   Tiling Array
(838)		   cDNA Array
(247)		   Oligo Array
(677)		   Bead Array
(137)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(14)		   HT-Seq
(251)		   Other
(9)		   All
(2,834)		  
1   |   2   |   3   |   4   |   5      »      [142]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Subgroup specific somatic copy number aberrations in the medulloblastoma genome [gDNA] (GSE37384) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) The Hospital for Sick Children 2012-04-18 Homo sapiens
Homo sapiens		 2,063,231,018
(1,880,794 x 1,097) 		1,097 by_platform
by_series
2 Subgroup specific somatic copy number aberrations in the medulloblastoma genome (GSE37385) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) The Hospital for Sick Children 2012-04-18 Homo sapiens
Homo sapiens		 2,063,231,018
(1,880,794 x 1,097) 		1,097 by_platform
by_series
3 Genome-wide survey of large rare copy number variations in Alzheimer’s disease among Caribbean Hispanics (GSE33528) [Bead Array] Illumina HumanHap650Yv2 Genotyping BeadChip (HumanHap650Y_v2-0_GenotypingBC_11237679_A) (GPL14932) Tanz Centre for Neurodegenerative Diseases 2011-11-07 Homo sapiens
Homo sapiens		 805,351,815
(662,841 x 1,215) 		1,215 by_platform
by_series
4 Mouse Atlas of Gene Expression Project (GSE4726) [SAGE NlaIII] SAGE:17:NlaIII:Mus musculus (GPL1349) Canada's Michael Smith Genome Sciences Centre 2006-04-26 Mus musculus
Mus musculus		 490,560,048
(2,477,576 x 198) 		70 9 5 14 11 12 3 7 15 22 17 13 by_platform
by_series
5 Broad chromosomal domains of histone modification patterns in C. elegans (GSE26186) [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) Ontario Institute for Cancer Research 2010-12-20 Caenorhabditis elegans
Caenorhabditis elegans		 160,650,000
(2,142,000 x 75) 		10 1 64 by_platform
by_series
6 Structural Variation of Chromosomes in Autism Spectrum Disorder. (GSE9222) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) The Hospital for Sick Children 2007-10-03 Homo sapiens
Homo sapiens		 148,745,646
(262,338 x 567) 		567 by_platform
by_series
7 Structural Variation of Chromosomes in Autism Spectrum Disorder. (GSE9222) [GeneChip] [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array (GPL3720) The Hospital for Sick Children 2007-10-03 Homo sapiens
Homo sapiens		 135,160,326
(238,378 x 567) 		567 by_platform
by_series
8 Genome-wide assessment of imprinted expression in human cells (GSE26286) [Bead Array] Illumina Human1M-Duov3 DNA Analysis BeadChip (Human1M-Duov3_B) (GPL6984) McGill University and Génome Québec Innovation Centre 2010-12-22 Homo sapiens
Homo sapiens		 124,715,448
(1,199,187 x 104) 		104 by_platform
by_series
9 eQTL Analysis Identifies Novel Associations Between Genotype and Gene Expression in the Human Intestine (Illumina SNP) (GSE41238) [Bead Array] HumanOmniExpress BeadChip (GPL13135) Mount Sinai Hospital 2012-09-30 Homo sapiens
Homo sapiens		 123,911,138
(733,202 x 169) 		169 by_platform
by_series
10 eQTL Analysis Identifies Novel Associations Between Genotype and Gene Expression in the Human Intestine (GSE41269) [Bead Array] HumanOmniExpress BeadChip (GPL13135) Mount Sinai Hospital 2012-10-01 Homo sapiens
Homo sapiens		 123,911,138
(733,202 x 169) 		169 by_platform
by_series
11 Cervical Tissue Long SAGE (GSE7433) [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) BCCRC 2007-04-02 Homo sapiens
Homo sapiens		 99,538,512
(6,221,157 x 16) 		16 by_platform
by_series
12 Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (GenomeWideSNP_6) (GSE27145) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of British Columbia 2011-02-08 Homo sapiens
Homo sapiens		 84,635,730
(1,880,794 x 45) 		45 by_platform
by_series
13 Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (GSE27367) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of British Columbia 2011-02-16 Homo sapiens
Homo sapiens		 84,635,730
(1,880,794 x 45) 		45 by_platform
by_series
14 Affymetrix SNP6.0 data for human induced pluripotent stem cells (hiPSCs), human Fibroblasts, and human embryonic stem cells (hESCs) (GSE26173) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) SLRI-Mount Sinai Hosp. 2010-12-19 Homo sapiens
Homo sapiens		 78,993,348
(1,880,794 x 42) 		3 2 37 by_platform
by_series
15 Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection (genotype) (GSE34588) [Bead Array] Illumina HumanOmni1-Quad BeadChip (GPL8882) luis 2011-12-20 Homo sapiens
Homo sapiens		 77,548,492
(1,140,419 x 68) 		68 by_platform
by_series
16 Genome sequencing of childhood medulloblastoma brain tumors links chromothripsis with TP53 mutations (GSE34258) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) Hospital for Sick Children 2011-12-08 Homo sapiens
Homo sapiens		 71,470,172
(1,880,794 x 38) 		38 by_platform
by_series
17 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GSE25893) [Tiling Array] FSU/NimbleGen Human 2.1M Whole Genome Tiling (GPL9973) The Hospital for Sick Children 2010-12-07 Homo sapiens
Homo sapiens		 71,335,407
(2,161,679 x 33) 		33 by_platform
by_series
18 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M) (GSE30312) [Tiling Array] FSU/NimbleGen Human 2.1M Whole Genome Tiling (GPL9973) The Hospital for Sick Children 2011-06-29 Homo sapiens
Homo sapiens		 71,335,407
(2,161,679 x 33) 		33 by_platform
by_series
19 Mapping autism risk loci using genetic linkage and chromosomal rearrangements (GSE6754) [GeneChip] [Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array (GPL2641) The Hospital for Sick Children 2007-01-16 Homo sapiens
Homo sapiens		 71,159,968
(10,208 x 6,971) 		6,971 by_platform
by_series
20 Whole-genome gene expression profiles of non-tumorous human lung tissues (GSE23546) [GeneChip] Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray (GPL10379) Laval University 2010-08-10 Homo sapiens
Homo sapiens		 70,657,922
(52,378 x 1,349) 		1,349 by_platform
by_series
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