Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(58)		   Primates
(1)		   Rodents
(35)		   Mammals
(9)		   Vertebrates
(10)		   Invertebrates
(18)		   Plants
(42)		   Bacteria
(57)		   Viruses
(2)		   Phages
(1)		   Unclassified
(15)		   All
(249)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(7)		   Tiling Array
(3)		   cDNA Array
(57)		   Oligo Array
(168)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(3)		   RT-PCR
(7)		   HT-Seq
(2)		   Other
(0)		   All
(249)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL17150 NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] 2,167,769 China Agriculture University 2013-05-11 NimbleGen Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1], Annotation in this record based on NCBI Sscrofa 10.2 2.1M probes in total
2 GPL11440 Custom Segment Definition for Human Exon 1.0 ST Array 769,464 picb 2011-01-12 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Custom Segment Definition for Human Exon 1.0 ST Array, HuEx-1_0-st array analysis with custom segment definitions. Linked supplementary file contains the probe to segment mappings for segments having uniquely mapped probes. Segments without uniquely mapped probes were not included in the analysis.
3 GPL13842 NimbleGen Rice CGH 3x720K Whole-Genome Tiling Arrays [100816_CB_Osat_NCBI_CGH] 718,255 China National Rice Research Institute 2011-07-11 NimbleGen Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, NimbleGen Rice CGH 3x720K Whole-Genome Tiling Arrays [100816_CB_Osat_NCBI_CGH], Annotation in this record based on NCBI Oryza sativa Japonica Group. 715,851 oligonucleotide probes with a median probe spacing of 500 bp.
4 GPL15225 NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH] 713,358 Institute of Biochemistry and Cell Biology,Shanghai Institutes for Biological Sciences,Chinese Academy of Sciences 2012-02-13 Roche NimbleGen Inc. Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, NimbleGen Mouse CGH 3x720K Whole-Genome Tiling Array [100718_MM9_WG_CGH], Build: MM9
5 GPL6331 NIBS-Arabidopsis-solexa-AGO sRNAs 586,511 National Institute Of Biological Sciences, Beijing (NIBS) 2007-12-27 Arabidopsis thaliana
Arabidopsis thaliana		 HT Sequencing other, NIBS-Arabidopsis-solexa-AGO sRNAs, Solexa, CSHL
6 GPL13398 Agilent chicken CGH array 420,288 China Agricultural University 2011-04-11 Agilent Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Agilent chicken CGH array, Agilent design ID 031112. Platform is based on chicken genome build WUGSC 2.1/galGal3.
7 GPL10653 Sf301_Nimblegen_380k array 389,307 Chinese center for disease control and prevention 2010-07-07 NimbleGen Shigella flexneri 2a str. 301
Shigella flexneri 2a str. 301		 Oligo Array in situ oligonucleotide, Sf301_Nimblegen_380k array, NimbleGen design name 2007-02-12_CSB_Sflexneri_tiling, design for Shigella flexneri 2a strain 301 and associated plasmid pCP301. The design includes random GC and other control probes. The .ndf file is linked below as a supplementary file.
8 GPL11070 NimbleGen custom Mouse 17K TSS array 386,802 Beijing Institue of Genomics, Chinese Academy of Science 2010-10-19 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen custom Mouse 17K TSS array, native array description file: 090120_MM8_JW_promoter.ndf native array description file: 090120_MM8_JW_promoter.pos Genome build information: MM8, build36 We designed a custom array containing -1Kb/+3.5kb of the TSS, to capture binding information representing ~17,000 NCBI reference genes
9 GPL13949 NimbleGen_HG18 RefSeq Promoter array 383,880 Peking Union Medical College 2011-07-20 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen_HG18 RefSeq Promoter array, HG18 native array description file: 080929_HG18_GC_CGH.ndf designid=8318
10 GPL13216 NimbleGen rhesus macaque promoter 383,671 Kunming Institute of Zoology 2011-02-23 NimbleGen Macaca mulatta
Macaca mulatta		 Oligo Array in situ oligonucleotide, NimbleGen rhesus macaque promoter, Annotation in this record based on UCSC rheMac2 The tilling array of orthologous regions of the NimbleGen human hg18 refseq promoter array (GPL9448)
11 GPL11071 NimbleGen custom Human HG18 144-gene region Array 381,882 Beijing Institue of Genomics, Chinese Academy of Science 2010-10-19 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen custom Human HG18 144-gene region Array, native array description file: 2007-10-25_HG18_QW_ChIP.ndf native array description file: 2007-10-25_HG18_QW_ChIP.pos Genome build information: HG18, build36 ~48,824 Kb of genomic sequences spanning the entire genomic loci of 144 genes and their flanking intergenic regions were examined in the ChIP-on-chip analysis. The custom array contains 381,882 probes with a median probe spacing 110 bp.
12 GPL9970 NimbleGen Danio rerio 385K Zv7 tiling array 350,607 Tongji University 2010-01-25 Nimblegen Danio rerio
Danio rerio		 Tiling Array in situ oligonucleotide, NimbleGen Danio rerio 385K Zv7 tiling array, UCSC zebrafish genome sequence Zv7 385K 50mer probes were printed and were spaced by 30 bp resulting in 80 bp resolution. Tiled regions include specifically selected genes (i.e. maternally provided genes, genes that are transcribed at zygotic genome activation, important developmental genes and known late genes) as well as two large contiguous genomic regions on linkage groups 3 and 11. The .ndf and .pos files are linked below as supplementary files.
13 GPL11315 ICDC Streptococcus suis GZ1 tilling arrays (MAP01, MAP02) 291,092 China CDC 2010-12-14 NimbleGen Streptococcus suis GZ1
Streptococcus suis GZ1		 Oligo Array in situ oligonucleotide, ICDC Streptococcus suis GZ1 tilling arrays (MAP01, MAP02), Annotation in this record is based on Streptococcus suis GZ1 (GenBank accession number CP000837). Customized tilling arrays were generated by using 29-mer oligonucleotide probes spaced every seven bases across the reference genome on both strands. Arrays MAP01 and MAP02 are represented by this Platform record.
14 GPL10340 Agilent-015223 Rat Genome CGH Microarray 244A 235,974 Shanghai Institutes for Biological Sciences 2010-04-19 Agilent Technologies Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-015223 Rat Genome CGH Microarray 244A,
15 GPL7013 IPPE Rice MPSS 111,161 Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences 2008-07-01 Oryza sativa
Oryza sativa		 MPSS MPSS, IPPE Rice MPSS, All MPSS was performed as described by Mineno et al.(Nucleic Acids Res. 2006 1765:1771).
16 GPL16730 Agilent-039659 hs_miR_18_addvirus 038169 62,976 First Affiliated Hospital of Nanjing Medical University 2013-02-27 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent-039659 hs_miR_18_addvirus 038169, Arrays of this design have barcodes that begin with 16039659 or 2539659. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
17 GPL14835 Agilent-029842 60K_CpG2 57,722 BioChainBJ 2011-11-03 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent-029842 60K_CpG2,
18 GPL8231 Gallus gallus 55k 080317_Chicken_galGal3_expr 55,316 Institute of Microbiology 2009-02-26 NimbleGen Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Gallus gallus 55k 080317_Chicken_galGal3_expr, The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
19 GPL14715 NimbleGen Human 100309_AS_human_100426_pz array [gene-level version] 49,389 Institute of Microbiology, Chinese Academy of Sciences 2011-10-11 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen Human 100309_AS_human_100426_pz array [gene-level version],
20 GPL15962 Agilent-037580 Plecoglossus altivelis SweetFishGene 50K 49,077 BioChainBJ 2012-08-20 Agilent Technologies Plecoglossus altivelis
Plecoglossus altivelis		 Oligo Array in situ oligonucleotide, Agilent-037580 Plecoglossus altivelis SweetFishGene 50K,
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