| 1 |
GPL6891 |
S. cerevisiae Tiling1.0R Array SNPScanner compatible |
12,070,743 |
Cancer Research UK London Research Institute |
2008-05-22 |
Affymetrix |
Saccharomyces cerevisiae
 |
GeneChip |
in situ oligonucleotide, S. cerevisiae Tiling1.0R Array SNPScanner compatible, GEO platform for S.cerevisiae Tiling1.0R Sc03b_MR_v04 containing per base pair features compatible with SNPScanner output. Gresham, D. et al. Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Science 311, 1932-1936 (2006). |
| 2 |
GPL10639 |
NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array |
2,157,868 |
University of Cambridge |
2010-06-30 |
NimbleGen |
Drosophila melanogaster
 |
Tiling Array |
in situ oligonucleotide, NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array, DM5_Tiling_Array Platform annotations based on Drosophila melanogaster, BDGP Release 5, April 2006. NimbleGen ChIP 2.1M WG-T (2.1M Drosophila melanogaster - Whole Genome Tiling Set) Design_ID = 6725 Native NimbleGen files linked below. From NimbleGen's website: * Format: 2.1M * Source: UCSC * Build: DM5 * Probe Length: 50-75mer * Median Probe Spacing: 55bp * Design Name: D. mel ChIP 2.1M WG-T Arr Del |
| 3 |
GPL16143 |
NimbleGen Mouse 2.1M deluxe promoter array (ver. 2) |
2,085,858 |
Medical Research Council |
2012-10-05 |
Roche Nimblegen |
Mus musculus
 |
Oligo Array |
spotted oligonucleotide, NimbleGen Mouse 2.1M deluxe promoter array (ver. 2), |
| 4 |
GPL14890 |
NimbleGen Mouse 2.1M deluxe promoter array |
2,056,330 |
Medical Research Council |
2011-11-16 |
Roche Nimblegen |
Mus musculus
|
Oligo Array |
spotted oligonucleotide, NimbleGen Mouse 2.1M deluxe promoter array, |
| 5 |
GPL16144 |
NimbleGen Mouse 2.1M deluxe promoter array (ver. 3) |
2,056,330 |
Medical Research Council |
2012-10-05 |
Roche Nimblegen |
Mus musculus
|
Oligo Array |
spotted oligonucleotide, NimbleGen Mouse 2.1M deluxe promoter array (ver. 3), |
| 6 |
GPL16498 |
Nimblegen_Human_720K_Chr11extra |
718,882 |
The University of Edinburgh |
2013-01-11 |
NimbleGen |
Homo sapiens
 |
Tiling Array |
in situ oligonucleotide, Nimblegen_Human_720K_Chr11extra, HG19 NCBI37 Tiling probes across Chr11 and parts of Chr17 and Chr22 120625_HG19_chr11extra_NG_CGH.ndf 120625_HG19_chr11extra_NG_CGH.pos |
| 7 |
GPL10461 |
NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3 |
714,000 |
Cardiff University |
2010-05-26 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3, hg18 native array description file: 080530_HG18_WG_CGH_v2_HX3.ndf native array description file: 080530_HG18_WG_CGH_v2_HX3.pos native array description file: 080530_HG18_WG_CGH_v2_HX3_probe_locations.gff |
| 8 |
GPL14361 |
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array |
711,794 |
Queen Mary University of London |
2011-08-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array, Build: HG18, NCBI 36 |
| 9 |
GPL6355 |
Plymouth Marine Laboratory 454 sequences, 439K |
438,908 |
Plymouth Marine Laboratory |
2008-01-09 |
|
marine metagenome
 |
HT Sequencing |
other, Plymouth Marine Laboratory 454 sequences, 439K, |
| 10 |
GPL3472 |
Sanger/Nimblegen Human array painting array_Case 1 |
388,102 |
Wellcome Trust Sanger Institute |
2006-02-20 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Case 1, |
| 11 |
GPL10113 |
NimbleGen/UCL human 388K tiling array |
387,835 |
UCL Cancer Institute |
2010-02-26 |
NimbleGen |
Homo sapiens
|
Tiling Array |
spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets. |
| 12 |
GPL8233 |
Nimblegen 2006-08-02_GRI4489_HG18_ChIP array |
386,419 |
University of Bristol |
2009-02-26 |
Nimblegen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Nimblegen 2006-08-02_GRI4489_HG18_ChIP array, |
| 13 |
GPL9708 |
NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 |
385,806 |
University of Cambridge |
2009-11-20 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis. |
| 14 |
GPL15904 |
Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions |
385,775 |
University of Bristol |
2012-08-08 |
Nimblegen (Roche) |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions, Format: 385K Build: HG18 Probe Length: 50-75mer Median Probe Spacing: 101bp Promoter Upstream Tiling: 800bp Promoter Downstream Tiling: 200bp Designid: 5179 Designname: 2007-01-30_HG18_5189_refseq Recommended Storage: Store arrays desiccated at room temperature. Tiled regions: WT1 region (chr11:31440000-33360000), H19 DMR (chr11:1975000-1982000), IGF2 DMR0 (chr11:2126000-2128000). |
| 15 |
GPL3481 |
Sanger/Nimblegen Human array painting array_Cases 2-4 |
383,589 |
Wellcome Trust Sanger Institute |
2006-02-23 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Cases 2-4, |
| 16 |
GPL8694 |
NimbleGen Homo sapiens 384K hg18 tiling set 16 |
383,527 |
King's College London |
2009-06-10 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Homo sapiens 384K hg18 tiling set 16, |
| 17 |
GPL5683 |
NimbleGen_S.cerevisiae_tiling_array |
379,216 |
Antonis Kirmizis |
2007-07-30 |
NimbleGen Systems Inc. |
Saccharomyces cerevisiae
|
Tiling Array |
in situ oligonucleotide, NimbleGen_S.cerevisiae_tiling_array, 379K element tiling array based on sacCer1 build of the yeast genome. The array contains 50-mer oligonucleotides, positioned at every 64 basepairs (bp) throughout the yeast genome representing both DNA strands. |
| 18 |
GPL9290 |
2005-09-13_Dros_300bp_60mer |
377,566 |
University of Cambridge |
2009-09-24 |
NimbleGen |
Drosophila melanogaster
|
Oligo Array |
in situ oligonucleotide, 2005-09-13_Dros_300bp_60mer, Release 4 genome from the Berkeley Drosophila Genome Project (BDGP). 60-bp probes at approximately 300 bp intervals, preferably no GATC sequences, CG content as close to 50% as possible, non-repetitive. |
| 19 |
GPL8147 |
Nimblegen 385k tiling array 081031_RDI_UK_Bsubtilis_FT |
376,000 |
Newcastle University |
2009-02-03 |
Nimblegen |
Bacillus subtilis
 |
Tiling Array |
in situ oligonucleotide, Nimblegen 385k tiling array 081031_RDI_UK_Bsubtilis_FT, |
| 20 |
GPL11256 |
NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) |
375,728 |
Wellcome Trust Sanger Institute |
2010-11-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array. |