| 1 |
GPL275 |
SAGE:10:Sau3A:Mus musculus |
157,598 |
|
2003-03-17 |
|
Mus musculus
 |
SAGE Sau3A |
SAGE Sau3A, SAGE:10:Sau3A:Mus musculus, |
| 2 |
GPL272 |
LC-20 |
37,632 |
Stanford University |
2003-03-13 |
|
Homo sapiens
 |
cDNA Array |
spotted DNA/cDNA, LC-20, Tip Configuration: Standard 48 tip Columns per Sector: 28 Rows per Sector: 28 Column Spacing: 157 Row Spacing: 157 |
| 3 |
GPL271 |
LC-17 |
28,032 |
Stanford University |
2003-03-13 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, LC-17, Tip Configuration: Standard 48 tip Columns per Sector: 25 Rows per Sector: 24 Column Spacing: 172 Row Spacing: 172 |
| 4 |
GPL279 |
SAGE:10:NlaIII:Meleagris gallopavo |
27,430 |
|
2003-03-19 |
|
Meleagris gallopavo
 |
SAGE NlaIII |
SAGE NlaIII, SAGE:10:NlaIII:Meleagris gallopavo, |
| 5 |
GPL274 |
UCSF 4Hs version 2 human long oligo array |
21,341 |
University of California San Francisco |
2003-03-16 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, UCSF 4Hs version 2 human long oligo array, Spotted long oligonucleotide array produced using Operon Human Genome Oligo Set Version 2 probes. This set includes 21329 oligonucleotides (mostly 69-mers) designed based upon representative sequences in build 147 of the human UniGene database. 12 negative control oligos are also included on these arrays. Keywords = spotted, long oligonucleotide |
| 6 |
GPL248 |
Dmel_arrayplatform |
20,000 |
Yale University School of Medicine |
2003-02-18 |
|
Drosophila melanogaster
 |
cDNA Array |
spotted DNA/cDNA, Dmel_arrayplatform, Spotted array using PCR fragments of approximately 95% of the genes in the D. melanogaster BDGP genome. We followed a sequence of decreasingly stringent tests to pick optimal primer pairs for the PCR fragments on the arrays. For each gene, we looked for (first) a 500b to 2kb sequence at the 3’ end and, failing this, (second) two 200b to 500b sequences in:(1) coding sequence, completely within an EST clot, and unduplicated (BLAST<=10^-4); (2) coding sequence, partially within an EST clot, unduplicated; (3) coding sequence, unduplicated; (4) exon, completely within an EST clot, unduplicated; (5) exon, partially within an EST clot, unduplicated; (6) exon, unduplicated; (7) sequence less than 2kb at the 3’ end. See above for the other details about making these arrays. |
| 7 |
GPL256 |
Riken 20k full-length cDNA |
19,828 |
University of California-San Diego |
2003-02-27 |
|
Mus musculus
|
cDNA Array |
spotted DNA/cDNA, Riken 20k full-length cDNA, This platform was made in the laboratory of Dr. Yasushi Okazaki at the Riken Genome Science Center, Yokohama Institute in Japan. This platform is composed of full-length cDNAs from libraries of different embryonic and adult mouse tissues. Keywords = Riken, full-length libraries |
| 8 |
GPL254 |
Caltech 16K Oligo Mouse Array |
16,281 |
California Institute of Technology |
2003-02-24 |
|
Mus musculus
|
Oligo Array |
spotted oligonucleotide, Caltech 16K Oligo Mouse Array, The 16K mouse Oligo probes used in this microarray were designed and manufactured by different companies. A total of 13,327 probes were designed and manufactured by Operon Technologies, Inc. while 2,304 probes were designed by Compugen and manufactured by Sigma Genosys. Probes made by Operon are 70mers in length while probes made by Compugen and Sigma are 65mers in length. The probes were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA). |
| 9 |
GPL260 |
Caltech 16K cDNA Mouse Array |
16,273 |
California Institute of Technology |
2003-03-06 |
|
Mus musculus
|
cDNA Array |
spotted DNA/cDNA, Caltech 16K cDNA Mouse Array, The 16K mouse cDNAs probes used in this microarray were designed using sequence information gathered from RIKEN FANTOM cDNA library. Probes can be 0.5 to 3 kb in length where about 60% of the probes represent full length transcripts. The PCR products were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA). |
| 10 |
GPL236 |
NIA_Mouse_15K_Array |
15,247 |
NIH / NIA |
2003-01-28 |
|
Mus musculus
|
cDNA Array |
spotted DNA/cDNA, NIA_Mouse_15K_Array, The NIA_Mouse_15K_Array platform is composed of cDNAs from the NIA Mouse 15K cDNA clone collection, thereby allowing easy retrieval of clones that yield interesting array results. NIA Mouse 15K is derived from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others. This platform information was designed to allow submissions for any array based on the NIA Mouse 15K cDNA clone set. IDs for this platform are the same as clone IDs in the NIA collection. Keywords = embryo stem preimplantation trophoblast blastocyst germ osteoblast |
| 11 |
GPL273 |
UCSF 3OPHs version 1 human long oligo array |
14,001 |
University of California San Francisco |
2003-03-16 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, UCSF 3OPHs version 1 human long oligo array, Spotted long oligonucleotide array produced using Operon Human Genome Oligo Set Version 1 probes. This set includes 13971 oligonucleotides (mostly 70-mers) designed based upon representative sequences in build 119 of the human UniGene database. 29 negative control oligos are also included on these arrays. Keywords = spotted, long oligonucleotide |
| 12 |
GPL242 |
Arabidopsis The Keck Resource Lab 12K Array |
11,965 |
Weizmann Institute of Science |
2003-02-02 |
|
Arabidopsis thaliana
 |
cDNA Array |
spotted DNA/cDNA, Arabidopsis The Keck Resource Lab 12K Array, The arrays contain 12k ESTs (Keck Resource Lab, Yale University). |
| 13 |
GPL233 |
BIOGEM Array |
10,862 |
UCSD |
2003-01-07 |
|
Mus musculus
|
cDNA Array |
spotted DNA/cDNA, BIOGEM Array, This array is designed to measure the stoicheometry of sample - array feature interaction. Keywords = natural units, absolute abundance |
| 14 |
GPL247 |
ISREC-HU10Kb |
10,368 |
Bordeaux University |
2003-02-11 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, ISREC-HU10Kb, Telechem superaldehyde glass slides printed with Incyte and Resgen PCR products. 4 x 8 subarrays of 18 x 18 spots. SA4000 scanner. |
| 15 |
GPL257 |
NCI_UniGEM2_HCC |
9,984 |
National Cancer Institute |
2003-03-05 |
Advanced Technology Center Microarray Facility (NIH/NCI/CCR/ATC) |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, NCI_UniGEM2_HCC, The array consists of 9128 wells. The gene set was based on the Incyte Human UniGem 2.0 version (Hs UniGene, Build #131, released on Feb 28, 2001) provided by Incyte Genomics, Inc. The set includes 122 Incyte EST clones; 8998 identifed with a public GenBank Accession; 8905 Unique GenBank Accessions; 8882 mapped into Hs UniGene Build #131; 8281 Unique UniGene Clusters; 1179 EST clusters; 7102 "Named" clusters. Keywords = hepatocellular carcinoma Keywords = metastasis Keywords = |
| 16 |
GPL243 |
Arabidopsis The Keck Resource Lab 9K Array |
9,216 |
Weizmann Institute of Science |
2003-02-02 |
|
Arabidopsis thaliana
|
cDNA Array |
spotted DNA/cDNA, Arabidopsis The Keck Resource Lab 9K Array, The arrays contain 9k ESTs (Keck Resource Lab, Yale University). |
| 17 |
GPL266 |
Bacillus_anthracis_CGH |
9,216 |
The Institute for Genomic Research |
2003-03-10 |
|
Bacillus anthracis
 |
cDNA Array |
spotted DNA/cDNA, Bacillus_anthracis_CGH, Amplicons representing 79 of 217 and 41 of 122 genes from pXO1 and pXO2 respectively, and 3601 of 5753 chromosomal genes as predicted by Glimmer 30 ( and see supplemental methods) were arrayed onto glass microscope slides (Telechem, Inc). Redundant genes were generally represented once or a few times on the array. NOTE: N/A indicates that during the completion of the sequencing and annotation project these coding regions were removed. Annotation is not provided for plasmid genes as these genes were not annotated by TIGR. All spots that are included have primer sequences included. Amplicon sequences are included only where the amplicon was contained within the final coding region and matched the sequence exactly. Keywords = Bacillus anthracis, Bacillus cereus, Comparative Genomic Hybridization |
| 18 |
GPL264 |
NMC_Rat_5k_cDNA_Ser2 |
7,688 |
Norwegian University of Science and Technology |
2003-03-07 |
|
Rattus norvegicus
 |
cDNA Array |
spotted DNA/cDNA, NMC_Rat_5k_cDNA_Ser2, The 5k rat cDNA arrays used here are part of a larger collection of 14k cDNAs purchased from Research Genetics (Huntsville, AL). (http://nova.idi.ntnu.no/MCF/products.html). Plasmids were isolated from overnight bacterial cultures in 96-well plates and cDNA inserts amplified by PCR using M13 primers 5'-ctg caa ggc gat taa gtt ggg taa c and 5'-gtg agc gga taa caa ttt cac aca gga aag a. The PCR products were purified with Montage PCR purification kit (Millipore) and quality and concentration was assessed by agarose gel electrophoresis. The purified PCR products were prepared in 50% DMSO (about 50-200 ng/ l) and spotted onto 25 x 75mm amino-silane coated CMT-GAPS glass slides (Corning, NY) using a printing robot built in-house in collaboration with NEMKO (Trondheim, Norway) after a prototype developed at the National Human Genome Research Institute (NHGRI), (http://www.nhgri.gov/DIR/LCG/15K(HTML/). The arrays were spotted with 8 pins and contained 2 x 4 blocks of 31 x 31 spots. The probes were fixed to the slide surface by UV irradiation. The 5k cDNA probes represent 4908 unique UniGene clusters, of which 2511 cDNAs (51%) were printed in duplicates. In addition, a few in-house cDNA probes and a set of positive and negative control elements including 10 different PCR products of exogenous DNA from SpotReportâ„¢ cDNA Array Validation System (Stratagene, La Jolla, CA) were printed on the arrays. Totally, each array contained 7688 elements including duplicates and controls. |
| 19 |
GPL261 |
ADR_SGF_CEA |
5,760 |
CEA |
2003-03-06 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, ADR_SGF_CEA, A collection of 5760 full length cDNA clones from the human infant brain 1NIB library kindly gifted by Genethon as bacterial colonies in 96-well microtitre plates. These clones were characterized by 5' and 3' sequencing. Plasmids containing clones were grown in Escherichia coli by standard microbiological methods. Each insert was PCR amplified (30 cycles) by sampling 1 µl of cell culture with vector primers. To obtain a sufficient amount of probes, a second run of PCR, consisting of 20 cycles, was performed using the same set of primers. PCR products ranged from 600 to 4000 bp in length. The PCR products were prepared in 96-well plates, purified by ethanol precipitation, washed in 70% ethanol, dried, dissolved in TE/DMSO (50/50) and stored at -80°C. PCR products were arrayed on amino-silane coated glass slide (Corning CMT-GAPS II) using a MicroGrid-II Micro-arrayer (BioRobotics, Cambridge, UK). Keywords = cDNA array, PCR producrs |
| 20 |
GPL268 |
ACF_SGF_CEA |
4,800 |
CEA |
2003-03-11 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, ACF_SGF_CEA, A collection of 5760 full length cDNA clones from the human infant brain 1NIB library kindly gifted by Genethon as bacterial colonies in 96-well microtitre plates. These clones were characterized by 5' and 3' sequencing. Plasmids containing clones were grown in Escherichia coli by standard microbiological methods. Each insert was PCR amplified (30 cycles) by sampling 1 µl of cell culture with vector primers. To obtain a sufficient amount of probes, a second run of PCR, consisting of 20 cycles, was performed using the same set of primers. PCR products ranged from 600 to 4000 bp in length. The PCR products were prepared in 96-well plates, purified by ethanol precipitation, washed in 70% ethanol, dried, dissolved in TE/DMSO (50/50) and stored at -80°C. PCR products were arrayed on amino-silane coated glass slide (Corning CMT-GAPS II) using a MicroGrid-II Micro-arrayer (BioRobotics, Cambridge, UK). Keywords = cDNA array, PCR products |
|