Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(365)
  Primates
(4)
  Rodents
(306)
  Mammals
(20)
  Vertebrates
(21)
  Invertebrates
(59)
  Plants
(125)
  Bacteria
(66)
  Viruses
(3)
  Phages
(0)
  Unclassified
(11)
  All
(981)
 
  SAGE NlaIII
(10)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(450)
  Tiling Array
(58)
  cDNA Array
(132)
  Oligo Array
(262)
  Bead Array
(25)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(8)
  HT-Seq
(25)
  Other
(9)
  All
(981)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Efficient targeted transcript discovery via array-based normalization of RACE libraries (GSE11433) [GeneChip] AFFYMETRIX Human ENCODE Chromosomes 1,2,4,5,6,7,8,9,10,11,12,13,14,15,16,18,19,20,21,X v2.0 (GPL6860) Affymetrix, Inc. 2008-05-13 Homo sapiens
Homo sapiens
257,235,840
(2,143,632 x 120)
10 10 20 20 30 10 10 10 by_platform
by_series
2 Efficient targeted transcript discovery via array-based normalization of RACE libraries (GSE11433) [GeneChip] AFFYMETRIX Human Chromosomes 21 & 22 v2.0b (GPL6861) Affymetrix, Inc. 2008-05-13 Homo sapiens
Homo sapiens
245,429,072
(2,191,331 x 112)
14 16 6 10 6 8 6 4 6 14 18 4 by_platform
by_series
3 High-throughput sequencing of small RNAs: Caenorhabditis elegans (GSE11738) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
179,289,920
(11,205,620 x 16)
1 15 by_platform
by_series
4 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae (GSE11611) [GeneChip] [Soybean] Affymetrix Soybean Genome Array (GPL4592) Virginia Tech 2008-05-29 Glycine max
Glycine max
154,270,740
(61,170 x 2,522)
6 2,516 by_platform
by_series
5 Developmental timecourse of C. elegans small RNAs with 5p monophosphates (GSE11734) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
100,850,580
(11,205,620 x 9)
1 8 by_platform
by_series
6 Molecular subtypes of DLBCL have distinct chromosomal aberrations (GSE11318) [Tiling Array] NCI NimbleGen Homo sapiens HG17 Whole Genome 385K Tiling Set version 1 (GPL6400) National Cancer Institute 2008-05-01 Homo sapiens
Homo sapiens
78,391,495
(386,165 x 203)
203 by_platform
by_series
7 Dual roles of the nuclear cap binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis (GSE11043) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) ZMBP - University of Tuebingen 2008-04-03 Arabidopsis thaliana
Arabidopsis thaliana
74,216,640
(6,184,720 x 12)
12 by_platform
by_series
8 Sister chromatid cohesion establishment by acetylation (GSE11527) [GeneChip] S. cerevisiae Tiling1.0R Array SNPScanner compatible (GPL6891) Cancer Research UK London Research Institute 2008-05-21 Saccharomyces cerevisiae
Saccharomyces cerevisiae
60,353,715
(12,070,743 x 5)
5 by_platform
by_series
9 A link between RNA metabolism and silencing affecting Arabidopsis development (GSE11070) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) Salk-Institute 2008-04-04 Arabidopsis thaliana
Arabidopsis thaliana
49,477,760
(6,184,720 x 8)
8 by_platform
by_series
10 EST mining of yellow potato and gene expression profiling of its infection by P. infestans using SAGE - SOLEXA (GSE11781) [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) Universidad de los Andes 2008-06-13 Solanum phureja
Solanum phureja
45,754,758
(7,625,793 x 6)
6 by_platform
by_series
11 Natural selection shapes genome wide patterns of copy number polymorphism in D. melanogaster (GSE11326) [Tiling Array] Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02) (GPL6882) University of Chicago 2008-05-02 Drosophila melanogaster
Drosophila melanogaster
45,150,375
(3,010,025 x 15)
15 by_platform
by_series
12 Genome-wide inter-primate comparison of gene expression profiles in multiple tissues (GSE11560) [Oligo Array] UC multi-primate Nimblegen microarray 388K (GPL6898) University of Chicago 2008-05-27 Homo sapiens
Homo sapiens
41,977,224
(388,678 x 108)
36 36 36 by_platform
by_series
13 Molecular Profiling of Primitive Hematopoietic Cells Generated In Vitro from Human Embryonic Stem Cells and In Vivo during Embryogenesis (GSE11795) [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) Canada's Michael Smith Genome Sciences Centre 2008-06-16 Homo sapiens
Homo sapiens
37,477,482
(6,246,247 x 6)
2 1 1 2 by_platform
by_series
14 Exon-level summary data from Affymetrix Human Exon 1.0 ST array (GSE11360) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) Children’s Hospital of Pittsburgh 2008-05-06 Homo sapiens
Homo sapiens
37,236,030
(1,432,155 x 26)
26 by_platform
by_series
15 Genetic variants in Major Histocompatibility Complex-linked genes Associate with Pediatric Liver Transplant Rejection (GSE11361) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) Children’s Hospital of Pittsburgh 2008-05-06 Homo sapiens
Homo sapiens
37,236,030
(1,432,155 x 26)
26 by_platform
by_series
16 Mutant analysis of C. elegans small RNAs with 5p monophosphates (GSE11735) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
33,616,860
(11,205,620 x 3)
3 by_platform
by_series
17 Human cleavage stage embryos are chromosomally unstable (GSE11663) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) KULeuven 2008-06-03 Homo sapiens
Homo sapiens
27,545,490
(262,338 x 105)
11 8 86 by_platform
by_series
18 Transcript Analysis of Human Mammary Cell Subsets using SAGE (GSE11387) [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) Canada's Michael Smith Genome Sciences Centre 2008-05-08 Homo sapiens
Homo sapiens
24,984,988
(6,246,247 x 4)
4 by_platform
by_series
19 Transcript Analysis of Human Mammary Cell Subsets (GSE11395) [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) Canada's Michael Smith Genome Sciences Centre 2008-05-09 Homo sapiens
Homo sapiens
24,984,988
(6,246,247 x 4)
4 by_platform
by_series
20 Mutant analysis of C. elegans small RNAs, 5p-end-independent (GSE11736) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans
22,411,240
(11,205,620 x 2)
2 by_platform
by_series
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