Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(89)		   Primates
(0)		   Rodents
(42)		   Mammals
(5)		   Vertebrates
(7)		   Invertebrates
(35)		   Plants
(32)		   Bacteria
(26)		   Viruses
(4)		   Phages
(0)		   Unclassified
(8)		   All
(253)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(15)		   Tiling Array
(20)		   cDNA Array
(53)		   Oligo Array
(138)		   Bead Array
(11)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(1)		   HT-Seq
(9)		   Other
(3)		   All
(253)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL8134 NimbleGen 071121_Celegans180_ChIP03_design_ID_6737 2,033,813 HHMI/UCB 2009-01-29 NimbleGen Systems Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, NimbleGen 071121_Celegans180_ChIP03_design_ID_6737,
2 GPL8135 NimbleGen 080319_C_elegans_ChIP_03_design_ID-7348 1,973,075 HHMI/UCB 2009-01-29 NimbleGen Systems Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, NimbleGen 080319_C_elegans_ChIP_03_design_ID-7348,
3 GPL8305 Toxoplasma gondii ChIP-chip genome-wide tiling array 751,209 CNRS 2009-03-16 Nimblegen Toxoplasma gondii ME49
Toxoplasma gondii ME49		 Tiling Array in situ oligonucleotide, Toxoplasma gondii ChIP-chip genome-wide tiling array, Tiling microarray encompassing 65 Mb of Toxoplasma gondii (strain ME49) genome (chromosomes Ia, Ib, II, III, IV, V, VIIa, VIIb, VIII, IX, X, XI and XII). RefSeq genome accession: NZ_ABPA00000000.1. 50mer probes selected at 82 bp interval spacing From : TOXODB release 4.0 Genomic sequence available at: http://toxodb.org/common/downloads/release-4.0/ Native NimbleGen files (ndf, pos) are linked below as supplementary files.
4 GPL8119 Affymetrix GeneChip Human HJAY Array r1 569,464 Affymetrix Inc 2009-01-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human HJAY Array r1,
5 GPL8167 Agilent Human Promoter ChIP-on-Chip Set 244K, combined Microarray (slides 1 and 2) HG17 build 478,160 UCLA 2009-02-06 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent Human Promoter ChIP-on-Chip Set 244K, combined Microarray (slides 1 and 2) HG17 build,
6 GPL8196 Agilent Human Promoter ChIP-on-Chip Set 244K, combined Microarray (slides 1 and 2) HG18 build 478,160 UCLA 2009-02-16 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent Human Promoter ChIP-on-Chip Set 244K, combined Microarray (slides 1 and 2) HG18 build,
7 GPL8072 Nimblegen human 60-mer gene expression array, set 1 of 1 391,015 University of California, San Diego 2009-01-13 Nimblegen Systems Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen human 60-mer gene expression array, set 1 of 1, The arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 390k oligonucleotides representing genes throughout the human genome. There is a total of 1 array.
8 GPL8133 NimbleGen 2006-05-26_CE_WS158_ChIP design_ID 3801 387,838 HHMI/UCB 2009-01-29 NimbleGen Systems Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, NimbleGen 2006-05-26_CE_WS158_ChIP design_ID 3801,
9 GPL8233 Nimblegen 2006-08-02_GRI4489_HG18_ChIP array 386,419 University of Bristol 2009-02-26 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen 2006-08-02_GRI4489_HG18_ChIP array,
10 GPL8080 Nimblegen Arabidopsis thaliana Whole Genome Tiling Array (385K) 3 of 3 385,991 KAIST 2009-01-15 Nimblegen Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Nimblegen Arabidopsis thaliana Whole Genome Tiling Array (385K) 3 of 3,
11 GPL8045 Nimblegen ENCODE HG18 385K 384,014 Case Western Reserve University 2009-01-09 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen ENCODE HG18 385K,
12 GPL8147 Nimblegen 385k tiling array 081031_RDI_UK_Bsubtilis_FT 376,000 Newcastle University 2009-02-03 Nimblegen Bacillus subtilis
Bacillus subtilis		 Tiling Array in situ oligonucleotide, Nimblegen 385k tiling array 081031_RDI_UK_Bsubtilis_FT,
13 GPL8286 NimbleGen Human Promoter Array 1.0 355,264 Vaccine Research Institute of San Diego 2009-03-11 Roche NimbleGen Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen Human Promoter Array 1.0,
14 GPL8141 Agilent_Dm_4.3_112_tiling_a 243,504 Duke University Medical Center 2009-02-01 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent_Dm_4.3_112_tiling_a, ChIP resolution tiling array for modENCODE. Average probe spacing of 112 bp for Drosophila genome (5.1). 1 of a 4 array set.
15 GPL8142 Agilent_Dm_4.3_112_tiling_b 243,504 Duke University Medical Center 2009-02-01 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent_Dm_4.3_112_tiling_b, ChIP resolution tiling array for modENCODE. Average probe spacing of 112 bp for Drosophila genome (5.1). 2 of 4 array set.
16 GPL8235 Agilent_Dm_4.3_112_tiling_c 243,504 Duke University Medical Center 2009-03-01 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent_Dm_4.3_112_tiling_c, ChIP resolution tiling array for modENCODE. Average probe spacing of 112 bp for Drosophila genome (5.1). 3 of a 4 array set.
17 GPL8236 Agilent_Dm_4.3_112_tiling_d 243,504 Duke University Medical Center 2009-03-01 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Oligo Array in situ oligonucleotide, Agilent_Dm_4.3_112_tiling_d,
18 GPL8264 UNC PerouLab 244K Custom Human Array version 3 243,504 University of North Carolina at Chapel Hill 2009-03-06 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, UNC PerouLab 244K Custom Human Array version 3, Agilent catalog probes plus custom probes designed at Dr. Charles Perou lab at UNC chapel hill
19 GPL8265 UNC PerouLab 244K Custom Human Array version 4 243,504 University of North Carolina at Chapel Hill 2009-03-06 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, UNC PerouLab 244K Custom Human Array version 4, agilent catalog probes plus custom probes designed at Dr. Charles Perou Lab at UNC
20 GPL8269 UNC PerouLab 244K Custom Human Array version 5 243,504 University of North Carolina at Chapel Hill 2009-03-09 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, UNC PerouLab 244K Custom Human Array version 5,
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