Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(73)		   Primates
(0)		   Rodents
(51)		   Mammals
(15)		   Vertebrates
(15)		   Invertebrates
(43)		   Plants
(47)		   Bacteria
(43)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(306)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(25)		   Tiling Array
(22)		   cDNA Array
(42)		   Oligo Array
(155)		   Bead Array
(8)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(13)		   HT-Seq
(39)		   Other
(0)		   All
(306)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11157 [Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array 2,795,708 Affymetrix, Inc. 2010-11-03 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%chip_type=Cytogenetics_Array #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbsnp-date=2010-04-00 #%dbsnp-version=131 #%dgv-date=2010-03-00 #%dgv-version=9 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%netaffx-annotation-date=2010-07-00 #%netaffx-annotation-netaffx-build=31
2 GPL11273 McIntyre D. simulans 2m v1.0 2,463,424 UF 2010-12-02 Affymetrix Drosophila simulans
Drosophila simulans		 GeneChip in situ oligonucleotide, McIntyre D. simulans 2m v1.0,
3 GPL11008 NimbleGen-Homo_sapiens-2.1M-hg18 2,173,668 Sage Bionetworks 2010-10-01 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen-Homo_sapiens-2.1M-hg18, design ID: 5173 design description: 0701_HG18_TILE_27 native array description file: 0701_HG18_TILE_09_HX1.ndf native array description file: 0701_HG18_TILE_09_HX1.pos
4 GPL11147 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4) 2,166,670 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (1 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
5 GPL11148 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4) 2,166,669 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (2 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
6 GPL11149 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (3 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
7 GPL11150 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (4 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
8 GPL11314 NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH 2,166,464 United States Department of Agriculture 2010-12-14 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH, This array was designed based on Btau_UMD3.0. The Btau_UMD3.1 assembly is identical in almost all respects to UMD3.0. All chromosomes are unchanged. For additional information, see http://www.cbcb.umd.edu/research/bos_taurus_assembly.shtml . The supplementary file 'GPL11314_Btau_4.0.txt' contains the results of LIFTOVER (default setting) to convert the positions of probes from UMD3.0 to Btau_4.0. About 95% (~2,066,000) of the probes were converted successfully.
9 GPL11335 NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1) 2,164,507 University of Washington 2010-12-18 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Tiling Array in situ oligonucleotide, NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1), gw2.1 genome-wide aCGH, with probes spread across the canFam2 genome assembly with 2164507 probes. designfile: CanFam2_CGH_HX1.ndf designname: CanFam2_CGH_HX1 designid: 7995 Genome build: canFam2
10 GPL11092 Mouse ChIP 2.1M WG-T Set-10 (4 of 10) 2,101,987 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (4 of 10), cat# 05340659001 NCBI build 36 (mm8)
11 GPL11075 Mouse ChIP 2.1M WG-T Set-10 (1 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-20 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (1 of 10), cat# 05340659001 NCBI build 36 (mm8)
12 GPL11090 Mouse ChIP 2.1M WG-T Set-10 (2 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (2 of 10), cat# 05340659001 NCBI build 36 (mm8)
13 GPL11091 Mouse ChIP 2.1M WG-T Set-10 (3 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (3 of 10), cat# 05340659001 NCBI build 36 (mm8)
14 GPL11100 Mouse ChIP 2.1M WG-T Set-10 (5 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (5 of 10), cat# 05340659001 NCBI build 36 (mm8)
15 GPL11101 Mouse ChIP 2.1M WG-T Set-10 (6 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (6 of 10), cat# 05340659001 NCBI build 36 (mm8)
16 GPL11103 Mouse ChIP 2.1M WG-T Set-10 (7 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (7 of 10), cat# 05340659001 NCBI build 36 (mm8)
17 GPL11104 Mouse ChIP 2.1M WG-T Set-10 (8 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (8 of 10), cat# 05340659001 NCBI build 36 (mm8)
18 GPL11105 Mouse ChIP 2.1M WG-T Set-10 (9 of 10) 2,101,986 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (9 of 10), cat# 05340659001 NCBI build 36 (mm8)
19 GPL11106 Mouse ChIP 2.1M WG-T Set-10 (10 of 10) 2,101,973 University of Massachusetts Medical School 2010-10-22 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, Mouse ChIP 2.1M WG-T Set-10 (10 of 10), cat# 05340659001 NCBI build 36 (mm8)
20 GPL11368 NimbleGen Mouse CGH Whole-Genome Tiling Array [080411_MM9_CGH_HX1] 2,090,470 NimbleGen Systems, Inc. 2010-12-29 Roche NimbleGen Inc. Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, NimbleGen Mouse CGH Whole-Genome Tiling Array [080411_MM9_CGH_HX1], NimbleGen description files linked below: 080411_MM9_CGH_HX1.ndf 080411_MM9_CGH_HX1.pos
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