Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(811)		   Primates
(10)		   Rodents
(564)		   Mammals
(32)		   Vertebrates
(48)		   Invertebrates
(184)		   Plants
(227)		   Bacteria
(112)		   Viruses
(2)		   Phages
(0)		   Unclassified
(5)		   All
(2,002)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(759)		   Tiling Array
(149)		   cDNA Array
(102)		   Oligo Array
(495)		   Bead Array
(186)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(14)		   HT-Seq
(285)		   Other
(10)		   All
(2,002)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Hepatocellular Carcinoma Differential Network (SNP profiling of tumor and non-tumor tissue) (GSE28127) [Bead Array] Illumina HumanHap650Yv3 Genotyping BeadChip (HumanHap650Yv3_A) (GPL6987) Merck 2011-03-23 Homo sapiens
Homo sapiens		 265,028,118
(660,918 x 401) 		401 by_platform
by_series
2 SNP data from blood DNAs of patients with gastric cancer (GSE26853) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) KRIBB 2011-01-25 Homo sapiens
Homo sapiens		 178,675,430
(1,880,794 x 95) 		95 by_platform
by_series
3 Population genetic properties of differentiated human copy number polymorphisms (GSE26450) [Oligo Array] Agilent Eichler Human CNP 180K v3.0 (GPL11387) Univerisity of Washington 2011-01-05 Homo sapiens
Homo sapiens		 171,293,360
(180,880 x 947) 		947 by_platform
by_series
4 Genome-wide Analyses of Diffuse Intrinsic Pontine Gliomas (GSE26576) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) St Jude Children's Research Institute 2011-01-12 Homo sapiens
Homo sapiens		 167,390,666
(1,880,794 x 89) 		51 4 34 by_platform
by_series
5 81 human leukemia samples (affymetrix exon array) (GSE27370) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) university of chicago 2011-02-16 Homo sapiens
Homo sapiens		 116,004,555
(1,432,155 x 81) 		81 by_platform
by_series
6 Affymetrix SNP array data for Chronic Lymphocytic Leukemia_diagnostic sample_patient samples (GSE28030) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) Uppsala Array Platform 2011-03-17 Homo sapiens
Homo sapiens		 96,802,722
(262,338 x 369) 		369 by_platform
by_series
7 Population genetic properties of differentiated human copy number polymorphisms (GSE26450) [Oligo Array] Agilent Eichler Human CNP 180K v2.1 (GPL11386) Univerisity of Washington 2011-01-05 Homo sapiens
Homo sapiens		 88,088,560
(180,880 x 487) 		487 by_platform
by_series
8 Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (GenomeWideSNP_6) (GSE27145) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of British Columbia 2011-02-08 Homo sapiens
Homo sapiens		 84,635,730
(1,880,794 x 45) 		45 by_platform
by_series
9 Prospective comparison of genome-wide aCGH platforms for the detection of CNVs in MR (GSE27367) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) University of British Columbia 2011-02-16 Homo sapiens
Homo sapiens		 84,635,730
(1,880,794 x 45) 		45 by_platform
by_series
10 Identification and functional impact of genomic copy number variants in zebrafish, an important human disease model (Zebrafish Strain CNVs) (CGH ZV81M 2) (GSE28278) [Oligo Array] Agilent-026161 ZV81M (GPL13352) Brigham and Women's Hospital/Harvard Medical School 2011-03-30 Danio rerio
Danio rerio		 74,025,216
(974,016 x 76) 		76 by_platform
by_series
11 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GenomeWideSNP_6) (GSE28111) [GeneChip] [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array (GPL6801) The Hospital for Sick Children 2011-03-22 Homo sapiens
Homo sapiens		 67,708,584
(1,880,794 x 36) 		36 by_platform
by_series
12 Exon array analysis reveals neuroblastoma tumors have distinct alternative splicing patterns according to stage and MYCN amplification status (GSE27608) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] (GPL5188) National Cancer Institute 2011-03-01 Homo sapiens
Homo sapiens		 67,311,285
(1,432,155 x 47) 		47 by_platform
by_series
13 MMRC aCGH reference collection (GSE26849) [Oligo Array] Agilent-014693 Human Genome CGH Microarray 244A (Probe name version) (GPL9128) Broad Institute 2011-01-25 Homo sapiens
Homo sapiens		 60,041,790
(236,385 x 254) 		254 by_platform
by_series
14 MMRC expression and aCGH reference collection (GSE26863) [Oligo Array] Agilent-014693 Human Genome CGH Microarray 244A (Probe name version) (GPL9128) Broad Institute 2011-01-25 Homo sapiens
Homo sapiens		 60,041,790
(236,385 x 254) 		254 by_platform
by_series
15 High Resolution Array CGH Identifies Common Mechanisms that Drive Embryonal Rhabdomyosarcoma Pathogenesis (GSE27392) [Tiling Array] NimbleGen Human CGH 2.1M Whole-Genome Tiling Array [080131_HG18_WG_CGH_v2D_HX1] (GPL13190) UT Southwestern 2011-02-17 Homo sapiens
Homo sapiens		 56,203,654
(2,161,679 x 26) 		26 by_platform
by_series
16 Validation of rapid embryo tracking using cell-free fetal DNA enriched from maternal circulation at 9 weeks gestation (GSE26404) [GeneChip] [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array (GPL3718) RMA of New Jersey 2011-01-03 Homo sapiens
Homo sapiens		 54,303,966
(262,338 x 207) 		136 71 by_platform
by_series
17 Marking of the genome by H3K4 methylation prior to embryonic gene activation (GSE27314) [Tiling Array] 090313_Zv7_PC_ChIP_HX1 (GPL10835) University of Oslo 2011-02-14 Danio rerio
Danio rerio		 54,205,625
(2,168,225 x 25) 		25 by_platform
by_series
18 DNA methylation data from human iPS cells, ES cells, cord blood, and keratinocytes (GSE27134) [Oligo Array] NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1] (GPL13134) Johns Hopkins University School of Medicine 2011-02-08 Homo sapiens
Homo sapiens		 51,633,432
(2,151,393 x 24) 		4 3 17 by_platform
by_series
19 Donor cell type influences the epigenome and differentiation potential of human induced pluripotent stem cells (GSE27224) [Oligo Array] NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1] (GPL13134) Children's Hospital, Boston 2011-02-10 Homo sapiens
Homo sapiens		 51,633,432
(2,151,393 x 24) 		4 3 17 by_platform
by_series
20 Transcriptome analysis on gastric cancer (GSE27342) [GeneChip] [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version] (GPL5175) University of Georgia 2011-02-16 Homo sapiens
Homo sapiens		 50,707,040
(316,919 x 160) 		160 by_platform
by_series
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