Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
[ Top ] > [ 2011-04 ]
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(76)		   Primates
(3)		   Rodents
(90)		   Mammals
(12)		   Vertebrates
(18)		   Invertebrates
(20)		   Plants
(92)		   Bacteria
(43)		   Viruses
(0)		   Phages
(0)		   Unclassified
(15)		   All
(371)		  
  SAGE NlaIII
(4)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(18)		   Tiling Array
(20)		   cDNA Array
(21)		   Oligo Array
(205)		   Bead Array
(8)		   Protein Array
(0)		   Antibody
(1)		   RT-PCR
(6)		   HT-Seq
(84)		   Other
(3)		   All
(371)		  
1   |   2   |   3   |   4   |   5      »      [19]
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL13490 Affymetrix Human Promoter 1.0R Array [genome build GRCh37] 3,837,458 Medical University Innsbruck 2011-05-04 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Promoter 1.0R Array [genome build GRCh37], Custom probe annotation of Affymetrix Human Promoter 1.0R Tiling microarray. Annotation based on genome build GRCh37 (NCBI build 37; hg19). The data table contains only those probes that have a unique complete alignment to the genome, probes with multiple alignments or additional incomplete alignments (allowing 1 mis-match) were excluded.
2 GPL13613 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 1 of 4 2,160,726 Johns Hopkins University 2011-05-18 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 1 of 4, Build: HG18, NCBI 36
3 GPL13614 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 2 of 4 2,160,726 Johns Hopkins University 2011-05-18 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 2 of 4, Build: HG18, NCBI 36
4 GPL13615 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 3 of 4 2,160,726 Johns Hopkins University 2011-05-18 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 3 of 4, Build: HG18, NCBI 36
5 GPL13616 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 4 of 4 2,160,724 Johns Hopkins University 2011-05-18 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 4 of 4, Build: HG18, NCBI 36
6 GPL13611 NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1] 2,151,397 Johns Hopkins University School of Medicine 2011-05-18 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1], Annotation based on UCSC human genome assembly Feb 2009 (hg19) designname=091020_HG19_CHARM_HX1 designid=10816
7 GPL13756 Human_HG18_Deluxe_Promoter_HX1_HD2.2 tiling array 2,125,410 UT Southwestern Medical Center 2011-06-21 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Human_HG18_Deluxe_Promoter_HX1_HD2.2 tiling array, Oligo coordinates based on genome build HG18. The array tiles RefSeq genes from -7000 to +3000 relative to the TSS, with 100bp probe spacing.
8 GPL13499 NimbleGen 2.1M Maize Methylation Array 2,120,701 University of Minnesota 2011-05-05 NimbleGen Zea mays
Zea mays		 Oligo Array in situ oligonucleotide, NimbleGen 2.1M Maize Methylation Array, Order ID#: OID29684 Native array description file: 100629_Zea_Mays_NS_CGH_HX1.ndf Native array description file: 100629_Zea_Mays_NS_CGH_HX1.pos The sequences of the oligonucleotides are available in the supplementary .ndf file.
9 GPL13752 Human_HG18_Deluxe_Promoter_HX1_HD2.1 tiling array 2,113,890 UT Southwestern Medical Center 2011-06-20 Nimblegen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Human_HG18_Deluxe_Promoter_HX1_HD2.1 tiling array, Oligo coordinates based on genome build HG18. The array tiles RefSeq genes from -7000 to +3000 relative to the TSS, with 100bp probe spacing.
10 GPL13654 NimbleGen Desulfovibrio vulgaris Hildenborough 2004K 2,003,627 Lawrence Berkeley Lab 2011-05-26 NimbleGen Desulfovibrio vulgaris str. Hildenborough
Desulfovibrio vulgaris str. Hildenborough		 Oligo Array in situ oligonucleotide, NimbleGen Desulfovibrio vulgaris Hildenborough 2004K,
11 GPL13487 Cavalli_Dmel_1_tiling 1,807,015 INSTITUTE of HUMAN GENETICS 2011-05-04 Nimblegen Systems Inc. Drosophila melanogaster
Drosophila melanogaster		 Oligo Array in situ oligonucleotide, Cavalli_Dmel_1_tiling,
12 GPL13483 Arabidopsis thaliana AtSNPtile 1 994,336 Institute for Evolution and Biodiversity 2011-05-03 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis thaliana AtSNPtile 1, This array contains both SNP probes and tiling probes. SNP probes interrogate ~250K SNPs obtained from resequencing of 20 diverse Arabidopsis thaliana strains (Clark et al. 2007). Each SNP is interrogated by the middle base of four 25mer probes, representing 2 alleles on 2 strands. Tiling probes interrogate ~1.5M unique sequences tiled along the Arabidopsis thaliana genome with ~35 bp resolution. The reference genome for the array design is Columbia-0. The array is based on The Arabidopsis Information Resource (TAIR) genome release TAIR9.
13 GPL13787 NimbleGen Homo sapiens CGH HX3 array [090130_HG18_Decipher_opt] 967,222 The Hospital for Sick Children 2011-06-29 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, NimbleGen Homo sapiens CGH HX3 array [090130_HG18_Decipher_opt], Genome build: hg18 NimbleGen Homo Sapiens 9105 HG18 WG CGH HX3
14 GPL13412 MM8 promter array 1 and 2 770,808 Stanford University 2011-04-14 Nimblegen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, MM8 promter array 1 and 2,
15 GPL13660 NimbleGen Custom Rice Centromere Tiling Array (design:080925/080227) 687,137 UW-Madison 2011-05-27 NimbleGen Oryza sativa
Oryza sativa		 Tiling Array in situ oligonucleotide, NimbleGen Custom Rice Centromere Tiling Array (design:080925/080227), Genomic tiling array that covers four rice centromeres (Cen4, Cen5, Cen7, and Cen8) using the NimbleGen 3x720K array based on the NimbleGen HD2 platform.
16 GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) 485,577 Illumina Inc. 2011-05-13 Illumina, Inc. Homo sapiens
Homo sapiens		 Bead Array oligonucleotide beads, Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482), 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore
17 GPL13535 Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand) 458,333 Harvard University 2011-05-15 Agilent Synechococcus elongatus PCC 7942
Synechococcus elongatus PCC 7942		 Oligo Array in situ oligonucleotide, Agilent Array ID 022715 (forward strand) and Array ID 022716 (reverse strand), Agilent 1x244k
18 GPL13398 Agilent chicken CGH array 420,288 China Agricultural University 2011-04-11 Agilent Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Agilent chicken CGH array, Agilent design ID 031112. Platform is based on chicken genome build WUGSC 2.1/galGal3.
19 GPL13476 2006-07-17_MM8Tiling_Set24 Set 24 of 38 392,778 INSTITUTE of HUMAN GENETICS 2011-04-30 Nimblegen Systems Inc. Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, 2006-07-17_MM8Tiling_Set24 Set 24 of 38,
20 GPL13366 NimbleGen_GenAu MB BCELL v2.5 391,015 Instutute of Molecular Pathology 2011-04-04 NimbleGen Mus musculus
Mus musculus		 Tiling Array in situ oligonucleotide, NimbleGen_GenAu MB BCELL v2.5, Custom array. genomic regions of potential pax5 target genes from mm6, including IGH and surrounding genes isothermal tiling oligos at 100bp
1   |   2   |   3   |   4   |   5      »      [19]
DBCLS | Site Policies | Contact Us