| 1 |
GPL15056 |
NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1] |
2,160,801 |
University of California at Berkeley |
2011-12-23 |
NimbleGen |
Arabidopsis thaliana
 |
Oligo Array |
in situ oligonucleotide, NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1], TAIR 8 designname: 080709_AT8_DZ_ChIP_HX1 designid: 7848 |
| 2 |
GPL15057 |
NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] |
2,157,868 |
NimbleGen Systems, Inc. |
2011-12-23 |
NimbleGen |
Drosophila melanogaster
 |
Tiling Array |
in situ oligonucleotide, NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725], Platform annotations based on UCSC dm3 (BDGP Release 5). NimbleGen ChIP 2.1M WG-T (2.1M Drosophila melanogaster - Whole Genome Tiling Set) Design_ID = 6725 Native NimbleGen files linked below. From NimbleGen's website: * Format: 2.1M * Source: UCSC * Build: DM3 * Probe Length: 50-75mer * Median Probe Spacing: 55bp * Design Name: D. mel ChIP 2.1M WG-T Arr Del |
| 3 |
GPL14890 |
NimbleGen Mouse 2.1M deluxe promoter array |
2,056,330 |
Medical Research Council |
2011-11-16 |
Roche Nimblegen |
Mus musculus
 |
Oligo Array |
spotted oligonucleotide, NimbleGen Mouse 2.1M deluxe promoter array, |
| 4 |
GPL14930 |
Agilent-024903 Common Primate Array 1x1M (Probe Name version) |
963,331 |
Brigham and Women's Hospital/Harvard Medical School |
2011-11-26 |
Agilent Technologies |
Homo sapiens
 |
Oligo Array |
spotted oligonucleotide, Agilent-024903 Common Primate Array 1x1M (Probe Name version), Agilent catalog probes for human (hg18) were downloaded from eArray and aligned against the chimpanzee (panTro2) and rhesus macaque(rheMac2) reference genomes using BLAT. Those probes that had at least 100% match to both reference genomes were similarity filtered based on the human reference genome (i.e. probes with only 1 perfect hit to hg18 were considered for the array). This array should not be considered as a genome-wide, unbiased copy number difference copy number discovery array. Since the probes were required to have 100% identity across human, chimpanzee, and rhesus macaque, the probes cluster together in regions of high conservation. Probe sequences and alignment locations are based on human (hg18),however, great apes and some old world monkeys can also be applied to this array. |
| 5 |
GPL14965 |
NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3] |
719,690 |
NimbleGen Systems, Inc. |
2011-12-06 |
Roche NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen Human 3x720k Whole Genome CGH [100718_HG18_WG_CGH_v3.1_HX3], Build: Hg18, NCBI 36 60mer probes. |
| 6 |
GPL14850 |
NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 537603] |
706,029 |
University of Michigan |
2011-11-07 |
Nimblegen |
Mus musculus
|
Tiling Array |
in situ oligonucleotide, NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 537603], Annotation in this record based on UCSC Mus musculus 8, Feb 2006 Genomic regions bound by Hoxa9/Meis1 in hematopoietic cells, isothermal tiling oligos at 100bp DESIGN_ID : 537603 native array description file: 100702_YH_MM8_regions_ChIP.ndf native array description file: 100702_YH_MM8_regions_ChIP.pos |
| 7 |
GPL14932 |
Illumina HumanHap650Yv2 Genotyping BeadChip (HumanHap650Y_v2-0_GenotypingBC_11237679_A) |
662,841 |
Tanz Centre for Neurodegenerative Diseases |
2011-11-26 |
Illumina, Inc. |
Homo sapiens
|
Bead Array |
oligonucleotide beads, Illumina HumanHap650Yv2 Genotyping BeadChip (HumanHap650Y_v2-0_GenotypingBC_11237679_A), Descriptor File Name(s),HumanHap650Y_v2-0_GenotypingBC_11237679_A.bpm Assay Format,Infinium II SNP Count,662841 |
| 8 |
GPL14865 |
[mjay_r2] Custom Affymetrix Mouse Exon Junction Array |
532,378 |
University of Iowa |
2011-11-09 |
Affymetrix |
Mus musculus
|
GeneChip |
in situ oligonucleotide, [mjay_r2] Custom Affymetrix Mouse Exon Junction Array, The MJAY_r2 platform contains the same probesets in the GPL13185 platform, yet the IDs (provided by Affymetrix in the library files) are not identical to those in GPL13185. The 'alternative/constitutive' information is provided for every exon/probeset which is important for the analysis of the microarray data associated with this platform. MJAY_r2.pgf : Probe Group File MJAY_r2.full.mps.txt : Meta Probeset File that Enables transcript level analysis mjay.r2.annotation_map.txt : contains information that links each probeset and transcript level identifiers to specific annotation information |
| 9 |
GPL14675 |
Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 |
420,288 |
Texas A&M University |
2011-10-05 |
Agilent Technologies |
Equus caballus
 |
Oligo Array |
in situ oligonucleotide, Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1, Arrays of this design have barcodes that begin with 16027318 or 2527318. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 10 |
GPL15058 |
Agilent custom 415K mouse CGH [design id 025735] |
420,288 |
UT MD Anderson Cancer Center |
2011-12-23 |
Agilent Technologies |
Mus musculus
|
Oligo Array |
in situ oligonucleotide, Agilent custom 415K mouse CGH [design id 025735], Belfer Institute for Applied Cancer Sciences. Custom 2x415K array for mouse array-CGH, X/Y chromosomes excluded. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. Probe coordinates are based on genome build UCSC mm9. The ID column represents the Agilent Feature Extraction feature number. |
| 11 |
GPL14855 |
NIMBLE_MMCCSAL07_14028_380k [MMCCSAL07_100416_SP_CGH] |
392,936 |
Vaccine Research Institute of San Diego |
2011-11-07 |
Roche (NimbleGen, Inc.) |
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
 |
Oligo Array |
in situ oligonucleotide, NIMBLE_MMCCSAL07_14028_380k [MMCCSAL07_100416_SP_CGH], design name: MMCCSAL07_100416_SP_CGH This set includes 374328 46~50mer oligonucleotides that hit both Typhimurium LT2 and Typhimurium 14028s, complemented with 10451 oligos that are specific for 14028s (and 100 duplicate spots). The probes were designed based on the Salmonella typhimurium LT2 (NC_003197.1) and 14028s (CP001363.1: complete genome and CP001362.1: plasmid) genomes, with a moving window of about 12 bases. All probes (including control oligos) are represented in this file. |
| 12 |
GPL15047 |
NIMBLE_MMCCSAL05_14028_380k |
389,480 |
Vaccine Research Institute of San Diego |
2011-12-21 |
Roche (NimbleGen, Inc.) |
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
|
Oligo Array |
in situ oligonucleotide, NIMBLE_MMCCSAL05_14028_380k, design name: MMCCSAL05_081030. This set includes 374328 (of 374433) 46~50mer oligonucleotides that hit both Typhimurium LT2 and Typhimurium 14028s, complemented with 10576 oligos that are specific for 14028s, 894 (of 900) oligos that are specific for Enteritidis PT4, and 100 duplicate spots. The probes were designed based on the Salmonella Typhimurium LT2 (NC_003197.1) and 14028s (CP001363.1: complete genome and CP001362.1: plasmid) genomes, with a moving window of about 12 bases. The PT4-specific probes were designed based on genome NC_011294. All probes (including control oligos) are represented in this file. |
| 13 |
GPL14676 |
RIMB/Wutz laboratory Mus musculus 385K Tiling array [2007-01-30_chrXs_2.aw] |
388,000 |
Institut Pasteur |
2011-10-05 |
NimbleGen Systems Inc. |
Mus musculus
|
Tiling Array |
in situ oligonucleotide, RIMB/Wutz laboratory Mus musculus 385K Tiling array [2007-01-30_chrXs_2.aw], DESIGN_ID: 5181; DESIGN_NAME: [2007-01-30_chrXs_2.aw]. 162,5 Mb of the mouse X chromosome and 14,6 Mb of the mouse chromosome 17 tiled at 250 bp spacing excluding repeat masked regions. Native NimbleGen file (ndf, pos) are linked below as supplementary files |
| 14 |
GPL14934 |
Nimblegen Human 390K HG17 Custom Array |
386,165 |
National Cancer Institute |
2011-11-28 |
Nimblegen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Nimblegen Human 390K HG17 Custom Array, NimbleGen arrays were synthesized using maskless array technology. A digital light projector (DLP1) was used to selectively deprotect features where new DNA bases are to be added. The DLP is 768 column x 1204 rows (XVGA). There were in total 389,119 elements on the array we used, of which 2,954 were controls and remaining 386,165 were measurement elements. The genome build was HG17. |
| 15 |
GPL14974 |
NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (1 of 3) |
385,991 |
Gregor Mendel Institute |
2011-12-07 |
NimbleGen |
Arabidopsis thaliana
|
Tiling Array |
in situ oligonucleotide, NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (1 of 3), Genome build information 2006-08-18_ATH6_ChIP_1.ndf 2006-08-18_ATH6_ChIP_1.pos |
| 16 |
GPL14975 |
NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (2 of 3) |
385,991 |
Gregor Mendel Institute |
2011-12-07 |
NimbleGen |
Arabidopsis thaliana
|
Tiling Array |
in situ oligonucleotide, NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (2 of 3), Genome build information 2006-08-18_ATH6_ChIP_2.ndf 2006-08-18_ATH6_ChIP_2.pos |
| 17 |
GPL14849 |
NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 10451] |
383,370 |
University of Michigan |
2011-11-07 |
Nimblegen |
Mus musculus
|
Tiling Array |
in situ oligonucleotide, NimbleGen_mouse(MM8)_Hoxa9 and Meis1 Binding Sequence Custom Tiling Array [Design_ID: 10451], Annotation in this record based on UCSC Mus musculus 8, Feb 2006 Genomic regions bound by Hoxa9/Meis1 in hematopoietic cells, isothermal tiling oligos at 100bp DESIGN_ID : 10451 native array description file:090807_UM_MM8_regions_ChIP.ndf native array description file:090807_UM_MM8_regions_ChIP.pos |
| 18 |
GPL14779 |
2006-11-02_HG18_CpG_Promo |
381,511 |
National Defense Medical Center |
2011-10-24 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, 2006-11-02_HG18_CpG_Promo, HG18 |
| 19 |
GPL14825 |
UWMadison/Donohue Streptomyces coelicolor A3(2) 385K_v1.0 |
374,980 |
University of Wisconsin - Madison |
2011-11-01 |
Nimblegen |
Streptomyces coelicolor A3(2)
) |
Oligo Array |
in situ oligonucleotide, UWMadison/Donohue Streptomyces coelicolor A3(2) 385K_v1.0, |
| 20 |
GPL14909 |
NimbleGen_Tufts University Pseudomonas fluorescens Pf0-1 373K array |
372,840 |
Tufts Universicty School of Medicine |
2011-11-21 |
NimbleGen |
Pseudomonas fluorescens Pf0-1
 |
Oligo Array |
in situ oligonucleotide, NimbleGen_Tufts University Pseudomonas fluorescens Pf0-1 373K array, NimbleGen design name 2006-07-27_TI205922_60mer, NimbleGen design ID 4328. Catalog design for Pseudomonas fluorescens PfO-1 (Taxonomy Id: 205922) covering NC_007492. Probes selected for 5736/5736 sequences. Median number of probes/sequence is 13 with an average of 13.00. Each probe will be replicated 5 times on the chip. Probes are randomly distributed over the surface of the array. Unused features have been filled with randomly generated probes of comparable GC content. The .ndf and .ngd files are linked below as supplementary files. |