Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(224)		   SAGE RsaI
(1)		   SAGE Sau3A
(16)		   MPSS
(56)		   GeneChip
(16,580)		   Tiling Array
(3,529)		   cDNA Array
(5,792)		   Oligo Array
(11,628)		   Bead Array
(2,848)		   Protein Array
(1)		   Antibody
(37)		   RT-PCR
(223)		   HT-Seq
(4,411)		   Other
(158)		   All
(45,516)		  
1   |   2   |   3   |   4   |   5      »      [2276]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 A whole-blood RNA transcript based prognostic model in castration-resistant prostate cancer (GSE45705) [RT-PCR] Source MDx Precision Profiles_Human (GPL16954) Mount Sinai School of Medicine 2013-04-02 Homo sapiens
Homo sapiens		 10,584
(168 x 63) 		63 by_platform
by_series
2 MicroArray Gene Expression Profiling of NKX2.1-GFP+ MGE-like Interneuron Precursors Derived from Human Embryonic Stem Cells (GSE45660) [Bead Array] Illumina HumanHT-12 V4.0 expression beadchip (GPL10558) UCSF 2013-04-01 Homo sapiens
Homo sapiens		 472,310
(47,231 x 10) 		10 by_platform
by_series
3 Expression data from arabidopsis wild type (Col-0) and JAV1 RNAi plant (GSE45662) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) tsinghua univercity 2013-04-01 Arabidopsis thaliana
Arabidopsis thaliana		 228,100
(22,810 x 10) 		10 by_platform
by_series
4 Effect of GSH gene expression peofile of Arabidopsis thaliana (GSE45677) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) CSIR-Indian Institute of Chemical Biology, Kolkata 2013-04-01 Arabidopsis thaliana
Arabidopsis thaliana		 91,240
(22,810 x 4) 		4 by_platform
by_series
5 The global gene expression pattern by KDX1 over-expression (GSE45692) [Oligo Array] Saccharomyces cerevisiae 3x20K Microarrays (GPL16942) Korea university 2013-04-01 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 5,881
(5,881 x 1) 		1 by_platform
by_series
6 Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure (GSE45693) [HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 2683) (GPL16949) CIRAD 2013-04-01 Mesorhizobium metallidurans,unidentified
Mesorhizobium metallidurans,unidentified		 3
(0 x 3) 		3 by_platform
by_series
7 Genome-wide transcriptional responses of two metal-tolerant symbiotic Mesorhizobium isolates to zinc and cadmium exposure (GSE45693) [HT Sequencing] Illumina HiSeq 2000 (Mesorhizobium metallidurans STM 4661) (GPL16950) CIRAD 2013-04-01 Mesorhizobium metallidurans,unidentified
Mesorhizobium metallidurans,unidentified		 3
(0 x 3) 		3 by_platform
by_series
8 Understanding transcriptional changes associated with the transition to selfing in Arabidopsis thaliana by using outgroup data (GSE45676) [HT Sequencing] Illumina Genome Analyzer IIx (Arabidopsis lyrata) (GPL16940) University of Utah 2013-04-01 Arabidopsis lyrata
Arabidopsis lyrata		 2
(0 x 2) 		2 by_platform
by_series
9 Understanding transcriptional changes associated with the transition to selfing in Arabidopsis thaliana (Arabidopsis lyrata and Arabidopsis thaliana data) (GSE45687) [HT Sequencing] Illumina Genome Analyzer IIx (Arabidopsis lyrata) (GPL16940) University of Utah 2013-04-01 Arabidopsis lyrata
Arabidopsis lyrata		 2
(0 x 2) 		2 by_platform
by_series
10 Gene expression profiles in liver of F344 rat treated with chemical (GSE45650) [Oligo Array] Agilent-015749 Rat ToxArrayIII ver.2 44Kx4 array (GPL16936) Chemicals Evaluation and Research Institute, Japan 2013-03-30 Rattus norvegicus
Rattus norvegicus		 527,040
(21,960 x 24) 		24 by_platform
by_series
11 Closely related parasites trigger distinct innate immune signaling pathways_I (GSE45632) [Bead Array] Illumina MouseWG-6 v2.0 expression beadchip (GPL6887) University of Pennsylvania 2013-03-29 Mus musculus
Mus musculus		 543,372
(45,281 x 12) 		12 by_platform
by_series
12 Closely related parasites trigger distinct innate immune signaling pathways (GSE45634) [Bead Array] Illumina MouseWG-6 v2.0 expression beadchip (GPL6887) University of Pennsylvania 2013-03-29 Mus musculus
Mus musculus		 543,372
(45,281 x 12) 		12 by_platform
by_series
13 Transcriptome-based characterization of the interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat co-cultures (GSE45623) [Oligo Array] Agilent TIFN Lactobacillus bulgaricus arrays, TB1_8, Version 1 (GPL16855) Arla Foods 2013-03-29 unidentified,Lactobacillus delbrueckii subsp. bulgaricus
unidentified,Lactobacillus delbrueckii subsp. bulgaricus		 29,532
(7,383 x 4) 		4 by_platform
by_series
14 Gene Expression Profiles Predict Postpartum-onset Depression Patients with Treatment-Resistant Depression Patients with Treatment-Resistant Depression (GSE45603) [Bead Array] Illumina HumanHT-12 V4.0 expression beadchip (GPL10558) MPI 2013-03-28 Homo sapiens
Homo sapiens		 9,918,510
(47,231 x 210) 		210 by_platform
by_series
15 Genomic Analysis of Microdissected Inflammatory Breast Cancer (GSE45582) [cDNA Array] LinkGenomics Whole Genome DNA Microarray (GPL16895) MD Anderson 2013-03-28 Homo sapiens
Homo sapiens		 551,565
(12,257 x 45) 		25 20 by_platform
by_series
16 Expression Analysis and Genomic Analysis of Microdissected Inflammatory Breast Cancer (GSE45584) [cDNA Array] LinkGenomics Whole Genome DNA Microarray (GPL16895) MD Anderson 2013-03-28 Homo sapiens
Homo sapiens		 551,565
(12,257 x 45) 		25 20 by_platform
by_series
17 A unique herpesviral transcriptional program in KSHV-infected lymphatic endothelial cells leads to mTORC1 activation and rapamycin sensitivity (GSE45600) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 165,720
(13,810 x 12) 		4 8 by_platform
by_series
18 Mock and stably infected rKSHV.219 cells (LEC, BEC, HUVEC, and HAEC) [Expt2] (GSE45591) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 110,480
(13,810 x 8) 		4 4 by_platform
by_series
19 Mock and stably infected rKSHV.219 cells (LEC and BEC) [Expt1] (GSE45590) [Tiling Array] Agilent-029238 KSHV tiling microarray (GPL16894) Novartis Institutes for BioMedical Research 2013-03-28 unidentified,Homo sapiens,Human herpesvirus 8
unidentified,Homo sapiens,Human herpesvirus 8		 55,240
(13,810 x 4) 		4 by_platform
by_series
20 Expression analysis of Yarrowia lipolytica Y4184 snf1 mutant (GSE45611) [Oligo Array] Customized Yarrowia lipolytica array (GPL16930) DuPont Central Research and Development 2013-03-28 Yarrowia lipolytica
Yarrowia lipolytica		 40,248
(6,708 x 6) 		6 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [2276]
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