Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(128)		   Primates
(2)		   Rodents
(68)		   Mammals
(8)		   Vertebrates
(16)		   Invertebrates
(24)		   Plants
(97)		   Bacteria
(33)		   Viruses
(1)		   Phages
(1)		   Unclassified
(7)		   All
(385)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(24)		   Tiling Array
(52)		   cDNA Array
(92)		   Oligo Array
(208)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(1)		   Other
(2)		   All
(385)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16936 Agilent-015749 Rat ToxArrayIII ver.2 44Kx4 array 21,960 Chemicals Evaluation and Research Institute, Japan 2013-03-30 Agilent Technologies Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-015749 Rat ToxArrayIII ver.2 44Kx4 array,
2 GPL16933 [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version] 75,212 Affymetrix Japan 2013-03-29 Affymetrix Danio rerio
Danio rerio		 GeneChip in situ oligonucleotide, [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 29, 2013: annotation table updated with netaffx build 33
3 GPL16788 [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version] 28,296 Affymetrix Japan 2013-03-14 Affymetrix Taeniopygia guttata
Taeniopygia guttata		 GeneChip in situ oligonucleotide, [FinGene-1_0-st] Zebra Finch Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Thu Oct 20 14:39:28 PDT 2011 #%chip_type=FinGene-1_0-st-v1 #%lib_set_name=FinGene-1_0-st #%lib_set_version=v1 #%genome-species=Taeniopygia guttata #%genome-version=taeGut1 #%genome-version-create_date=2008-07-00 #%annotation-version=design-time
4 GPL16772 Oligo GEArray for Human Endothelial Biology 114 Keio University School of Med 2013-03-11 SuperArray Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Oligo GEArray for Human Endothelial Biology,
5 GPL16773 Oligo GEArray for Human Chemokine & Receptors 113 Keio University School of Med 2013-03-11 SuperArray Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Oligo GEArray for Human Chemokine & Receptors,
6 GPL16752 Agilent-022755 momNIFTS10 (probe version) 43,803 NARO Institute of Fruit Tree Science 2013-03-05 Agilent Technologies Prunus persica
Prunus persica		 Oligo Array in situ oligonucleotide, Agilent-022755 momNIFTS10 (probe version), Momo 091030 Arrays of this design have barcodes that begin with 16022755 or 2522755. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
7 GPL16755 Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version] 43,684 Graduate School of Medical Sciences, Kyushu University 2013-03-05 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus		 Oligo Array in situ oligonucleotide, Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version], Arrays of this design have barcodes that begin with 16030687 or 2530687. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
8 GPL16371 Agilent-027840 Rat miRNA Microarray Rel.14.0 15,744 Biomatrix Research Inc. 2012-12-12 Agilent Technologies Rattus norvegicus
Rattus norvegicus		 Oligo Array in situ oligonucleotide, Agilent-027840 Rat miRNA Microarray Rel.14.0, Arrays of this design have barcodes that begin with 16027840 or 2527840. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9 GPL16362 3D-Gene Mouse miRNA Oligo Chip V17.1.0 1,135 Toray Industries,Inc. 2012-12-07 Toray Industries, Inc. Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, 3D-Gene Mouse miRNA Oligo Chip V17.1.0,
10 GPL16184 [Aoryzaea520360F] Affymetrix Aspergillus oryzae DNAchip 13,725 National Research Institute of Brewing 2012-10-16 Affymetrix Aspergillus oryzae RIB40
Aspergillus oryzae RIB40		 GeneChip in situ oligonucleotide, [Aoryzaea520360F] Affymetrix Aspergillus oryzae DNAchip,
11 GPL16083 Agilent-028004 G4851A SurePrint G3 Hmn GE 8x60K Microarray [Probe Name] 42,545 Tokyo Medical and Dental University 2012-09-20 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Agilent-028004 G4851A SurePrint G3 Hmn GE 8x60K Microarray [Probe Name], This is the Probe Name version of GPL11339 [Feature Number version]
12 GPL16035 TUS mouse 22k v1.0 22,656 Tokyo University of Science 2012-09-10 Tokyo University of Science Mus musculus
Mus musculus		 cDNA Array spotted DNA/cDNA, TUS mouse 22k v1.0,
13 GPL16017 Agilent_017367 NISR Aspergillus oryzae 24K v.2.0 24,196 Noda Institute for Scientific Research 2012-09-04 Agilent technologies Aspergillus oryzae RIB40
Aspergillus oryzae RIB40		 Oligo Array in situ oligonucleotide, Agilent_017367 NISR Aspergillus oryzae 24K v.2.0,
14 GPL15968 NimbleGen Tomato ITAG2 gene promoters 720K array 694,802 National Food Research Institute 2012-08-21 NimbleGen Systems Inc. Solanum lycopersicum
Solanum lycopersicum		 Oligo Array in situ oligonucleotide, NimbleGen Tomato ITAG2 gene promoters 720K array, Tomato genome sequence build SL2.31 provided by the Tomato Genome Consortium and a gene prediction model (ITAG2) provided by the International Tomato Annotation Group (ITAG) (http://solgenomics.net/organism/Solanum_lycopersicum/genome) Probes (52-70 mers tiled throughout non-repetitive sequences at a median spacing of 80 bp) were designed from the 2-kb upstream (putative promoter) regions of the predicted genes.
15 GPL15776 Agilent-024824 Bombyx mori custom array 15,744 Kanazawa University 2012-07-06 Agilent Technologies Bombyx mori
Bombyx mori		 Oligo Array in situ oligonucleotide, Agilent-024824 Bombyx mori custom array, Arrays of this design have barcodes that begin with 16024824 or 2524824. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. Agilent-024824 Unigene custom made (8x16k) Oligo Microarray (Agilent Technologies, Inc.).
16 GPL15777 NimbleGen_Scoe_60mer_4plex 8,154 National Institute for Agro-Environmental Sciences 2012-07-06 Roche NimbleGen, Inc. Streptomyces coelicolor A3(2)
Streptomyces coelicolor A3(2)		 Oligo Array spotted oligonucleotide, NimbleGen_Scoe_60mer_4plex, NimbleGen custom prokaryotic gene expression 72k_4plex array NimbleGen design name: 2007-11-29_GFC268_Scoe_60mer_4plex 2007-11-29_GFC268_Scoe_60mer_4plex.ndf 2007-11-29_GFC268_Scoe_60mer_4plex.ngd
17 GPL15686 Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182 55,988 Tokyo University of Marine Science and Technology 2012-06-11 Agilent Technologies Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, Agilent-034067 Oncorhynchus mykiss RTG_Array_Ver.1 032182, Arrays of this design have barcodes that begin with 16034067 or 2534067. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
18 GPL15668 Agilent-016772 G. max (Soybean) Oligo Microarray 4x44K 45,220 Tokyo University of Agriculture and Technology 2012-06-06 Agilent Technologies Glycine max
Glycine max		 Oligo Array in situ oligonucleotide, Agilent-016772 G. max (Soybean) Oligo Microarray 4x44K, G. max (Soybean) Oligo Microarray 4x44K Arrays of this design have barcodes that begin with 16016772 or 2516772. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
19 GPL15646 Agilent customized Chicken CGH Microarray 4x180K 170,000 Kyoto University 2012-06-04 Agilent Technologies Gallus gallus
Gallus gallus		 Oligo Array in situ oligonucleotide, Agilent customized Chicken CGH Microarray 4x180K,
20 GPL15627 3D-Gene Schizosaccharomyces pombe Yeast Oligo Chip 6k 5,144 Toray Industries,Inc. 2012-05-30 TORAY Industries, Inc. Schizosaccharomyces pombe
Schizosaccharomyces pombe		 Oligo Array spotted oligonucleotide, 3D-Gene Schizosaccharomyces pombe Yeast Oligo Chip 6k,
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