Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(32)		   Primates
(0)		   Rodents
(23)		   Mammals
(1)		   Vertebrates
(4)		   Invertebrates
(3)		   Plants
(46)		   Bacteria
(1)		   Viruses
(0)		   Phages
(0)		   Unclassified
(3)		   All
(113)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7)		   Tiling Array
(7)		   cDNA Array
(60)		   Oligo Array
(36)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(1)		   All
(113)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1006 Mouse 13.4K long oligonucleotide array (Operon) 13,872 Lund University 2004-02-20 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse 13.4K long oligonucleotide array (Operon), The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9. Keywords = spotted, long oligonucleotide, Operon
2 GPL10422 SWEGENE H_v3.0.1 13,526 University of Gothenburg 2010-05-17 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v3.0.1,
3 GPL10423 SWEGENE H_v2.1.1 13,526 University of Gothenburg 2010-05-17 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, SWEGENE H_v2.1.1,
4 GPL10468 Swegene H_v2.1.1_20k 20,095 Clinical Sciences 2010-05-28 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Swegene H_v2.1.1_20k,
5 GPL10579 GynObsLU Human 800 PE-associated cDNA 11,124 Uppsala University 2010-06-23 Swegene DNA Microarray resource center at Lund University Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, GynObsLU Human 800 PE-associated cDNA,
6 GPL10704 University of Gothenburg Rainbow trout 15.5K microarray version 2 15,624 University of Gothenburg 2010-07-20 febit gmbh Oncorhynchus mykiss
Oncorhynchus mykiss		 Oligo Array in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 2,
7 GPL10853 NimbleGen Mouse 27K 4C-H19ICR Enriched Loci 26,934 Karolinska Institute 2010-08-24 NimbleGen Mus musculus
Mus musculus		 Oligo Array in situ oligonucleotide, NimbleGen Mouse 27K 4C-H19ICR Enriched Loci, MM9 2006-05-22_MM6_custom_50mer_ChIP
8 GPL11039 Exiqon miRCURY LNA microRNA array v.9.2 Extended Version 3,412 Lund University, Sweden 2010-10-12 Exiqon Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA array v.9.2 Extended Version, Each Gene ID is represented four times on the array, this platform table represents the condensed version. Please see the supplementary array layout file below for complete layout. Array represents miRBase version 9.2 with additional features.
9 GPL11381 Eurogentec Schizosaccharomyces pombe IGR+ORF array (J120E) 22,176 Karolinska Inst 2011-01-04 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec Schizosaccharomyces pombe IGR+ORF array (J120E),
10 GPL11442 Capitalbio mammal microRNA V2.0 1,764 Karolinska Institutet 2011-01-12 Capitalbio Homo sapiens,Mus musculus,Rattus norvegicus
Homo sapiens,Mus musculus,Rattus norvegicus		 Oligo Array spotted oligonucleotide, Capitalbio mammal microRNA V2.0,
11 GPL1226 Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2 13,872 Lund University 2004-05-10 Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2, The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham). Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9. Keywords = spotted, long oligonucleotide, Operon
12 GPL13140 KTH Hum 34k Oligo Microarray 36,864 Uppsala University 2011-02-08 KTH Microarray Center http://www.biotech.kth.se/molbio/microarray/ Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, KTH Hum 34k Oligo Microarray,
13 GPL13347 Agilent-025987 Human miRNA Microarray Release 14.0 G4471A (miRNA ID version) 211 Karolinska Institutet 2011-03-30 Agilent Technolgies Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Agilent-025987 Human miRNA Microarray Release 14.0 G4471A (miRNA ID version), http://www.genomics.agilent.com/GenericA.aspx?PageType=Product&SubPageType=ProductLiterature&PageID=1533 8x15K array Spotted 60mer oligos.
14 GPL13421 SWEGENE mouseV4_37K_withControls 37,632 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2011-04-18 Swegene DNA Microarray Resource Centre Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, SWEGENE mouseV4_37K_withControls,
15 GPL13623 Umea Lucidea array 21,168 Umeå University 2011-05-19 Clinical bacteriology, Umeå university Pinus sylvestris,Mus musculus
Pinus sylvestris,Mus musculus		 cDNA Array spotted DNA/cDNA, Umea Lucidea array, The in-house produced cDNA-array contains 44 clones: 19 clones from mice, 4 clones from Pine (involved in photosynthesis) and 21 artificial clones from the Lucidea Universal ScoreCard (Amersham Bioscienses), where each clone was printed 480 times in 48 identically designed sub-grids.
16 GPL13703 Exiqon miRCURY LNA microRNA array v.11.0 Extended Version 14,592 Lund University, Sweden 2011-06-08 Exiqon Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA array v.11.0 Extended Version, Array represents miRBase version 11.0 with additional features.
17 GPL13722 Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4 [ORF-centered] 6,218 Gothenburg University 2011-06-14 UHN Microarray Center Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4 [ORF-centered], This is an ORF-centered version of Platform GPL4462
18 GPL14003 PGA Mouse chip 20K oligo array, version 1.1 19,549 Lund University 2011-07-30 DNA core facility, Center for Computational and Integrative Biology, Massachusetts General Hospital Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, PGA Mouse chip 20K oligo array, version 1.1,
19 GPL14004 Swegene Mouse 36k oligo array (Operon libraries Version 4.0) 35,709 Lund University 2011-07-30 Swegene DNA Microarray Resource Center, Department of Oncology, Lund University, Sweden (http://swegene.onk.lu.se) Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Swegene Mouse 36k oligo array (Operon libraries Version 4.0), Mouse array-ready oligonucleotide libraries Version 4.0 from Operon (Operon Biotechnologies, Germany)
20 GPL14149 miRCURY LNA microRNA Array, 5th generation [Human miRBase 17] 2,027 Lund University, Sweden 2011-08-15 Exiqon A/S Homo sapiens,Human herpesvirus 1,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8
Homo sapiens,Human herpesvirus 1,Human herpesvirus 5,Murid herpesvirus 1,Human herpesvirus 4,BK polyomavirus,JC polyomavirus,Simian virus 40,Human immunodeficiency virus 1,Murid herpesvirus 4,Human herpesvirus 8		 Oligo Array spotted oligonucleotide, miRCURY LNA microRNA Array, 5th generation [Human miRBase 17], This platform is identical to GPL9908, but with updated microRNA names to miRBase 17.
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