Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(32)

Primates
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Viruses
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Phages
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Unclassified
(3)

All
(114)

SAGE NlaIII
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SAGE RsaI
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SAGE Sau3A
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MPSS
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Protein Array
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Antibody
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RT-PCR
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HT-Seq
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Other
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All
(114)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL9485	NimbleGen Mouse MM8 Deluxe Promoter Array	2,137,504	Lund University	2009-10-23	NimbleGen	Mus musculus	Oligo Array	in situ oligonucleotide, NimbleGen Mouse MM8 Deluxe Promoter Array, 182007-09-21_MM8_Deluxe_Promoter_HX1
2	GPL9077	SWEGENE_BAC_38K	41,760	SCIBLU - Swegene Centre for Integrative Biology at Lund University	2009-08-21	SCIBLU - Swegene Centre for Integrative Biology at Lund University	Homo sapiens	cDNA Array	spotted DNA/cDNA, SWEGENE_BAC_38K,
3	GPL8833	Lund Strategic Center Mouse Illumina Expression Chip V6.1.1	46,657	Lund Strategic Center for Stem Cell Biology and Cell Therapy	2009-07-08	Illumina	Mus musculus	Bead Array	oligonucleotide beads, Lund Strategic Center Mouse Illumina Expression Chip V6.1.1,
4	GPL8461	Eurogentec AG S. pombe Microarray Platform	6,679	Karolinska Inst	2009-04-21	Eurogentec AG	Schizosaccharomyces pombe	cDNA Array	spotted DNA/cDNA, Eurogentec AG S. pombe Microarray Platform,
5	GPL8254	University of Gothenburg Rainbow trout 15.5K microarray version 1	15,624	University of Gothenburg	2009-03-05	Department of Neuroscience and Physiology, University of Gothenburg / Febit gmbh, Heidelberg, Germany	Oncorhynchus mykiss	Oligo Array	in situ oligonucleotide, University of Gothenburg Rainbow trout 15.5K microarray version 1,
6	GPL8222	Zoarces viviparus validation microarray	124,992	University of Gothenburg	2009-02-23	Department of Zoology, University of Gothenburg / Febit gmbh, Heidelberg, Germany	Zoarces viviparus	Oligo Array	in situ oligonucleotide, Zoarces viviparus validation microarray, This microarray contains 117,316 probes used to evaluate the transcript assembly described in Kristiansson et al 2009.
7	GPL7878	ohlsson_mm6_dedicated	389,353	Karolinska Institute	2008-12-20	NimbleGen Inc.	Mus musculus	Tiling Array	spotted oligonucleotide, ohlsson_mm6_dedicated, Customized tiling array was designed based on our genome-wide 4C screening (data not uploaded) for mm6 assembly of mouse genome.
8	GPL7768	KTH Human 30k v1.0	36,864	Royal Institute of Technology	2008-12-10	Royal Institute of Technology, Stockholm, Sweden	Homo sapiens	Oligo Array	spotted oligonucleotide, KTH Human 30k v1.0,
9	GPL7734	Eurogentec AG S. pombe ORF array 11k (spD080C)	11,520	Karolinska Institute	2008-12-03	Eurogentec AG	Schizosaccharomyces pombe	cDNA Array	spotted DNA/cDNA, Eurogentec AG S. pombe ORF array 11k (spD080C), Schizosaccharomyces pombe 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray Reference: Xue Y, Haas SA, Brino L, Gusnanto A et al. A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 2004 Jan 15;21(1):25-39. PMID: 14745780
10	GPL7413	SWEGENE Rat 70mer oligonucleotide array version 1.0	5,614	University of SkÃƒÂ¶vde	2008-10-01	Swegene DNA Microarray Resource Center, Lund, Sweden	Rattus norvegicus	Oligo Array	spotted oligonucleotide, SWEGENE Rat 70mer oligonucleotide array version 1.0,
11	GPL7247	SWEGENE_BAC_33K_Full	36,288	SCIBLU - Swegene Centre for Integrative Biology at Lund University	2008-09-04	Swegene DNA Microarray Resource Centre	Homo sapiens	Tiling Array	spotted DNA/cDNA, SWEGENE_BAC_33K_Full, The 33k tiling BAC Array set contains 33,370 large-insert clones with complete genome coverage. The clone set consists of the 32k BAC clone library (GEO accession GPL4723) with additional clones located in the telomeric regions (Knight SJ et al., Am J Hum Genet 2000) and clones covering microdeletion syndromes (Vissers LE et al., Am J Hum Genet 2003).
12	GPL7203	LUH Human Genome CGH Microarray 244A	239,115	Dept of Clinical Genetics	2008-08-22	Agilent Technologies	Homo sapiens	Oligo Array	in situ oligonucleotide, LUH Human Genome CGH Microarray 244A, This microarray is AgilentÃ¢â‚¬â„¢s premium product for human DNA copy-number profiling. Over 236,000 60-mer oligonucleotide probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 7.4 kb and 16.5 kb respectively. This microarray is designed for use with AgilentÃ¢â‚¬â„¢s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction.
13	GPL7191	Print_730	43,008	Karolinska Institute, Karolinska University Hospital, Solna	2008-08-21	Stanford Functional Genomics Facility, Stanford School of Medicine	Homo sapiens	cDNA Array	spotted DNA/cDNA, Print_730,
14	GPL7180	LUH Illumina human-6 v2.0 expression beadchip	46,713	Dept of Clinical Genetics	2008-08-18	Illumina Inc.	Homo sapiens	Bead Array	oligonucleotide beads, LUH Illumina human-6 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 48,000 transcript probes per sample using the Human-6 v2 beadchip.
15	GPL6922	SuperArray Mouse stem cell oligonucleotide array	286	Lund University	2008-06-03	Superarray Biosciences	Mus musculus	Oligo Array	spotted oligonucleotide, SuperArray Mouse stem cell oligonucleotide array, Contains 263 stem cell related genes printed on nylon membrane.
16	GPL6732	Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF (REFSEQ_7)	26,714	Karolinska Institutet	2008-04-11	Affymetrix	Homo sapiens	GeneChip	in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF (REFSEQ_7), This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the REFSEQ7 version for HGU-133_plus2
17	GPL6596	University of Helsinki 9.6K Populus euphratica stress cDNA array	9,600	UmeÃƒÂ¥ Plant Science Centre	2008-03-18	University of Helsinki	Populus euphratica	cDNA Array	spotted DNA/cDNA, University of Helsinki 9.6K Populus euphratica stress cDNA array, Plant material for EST library construction: The Ein Avdat valley is located in the Negev desert in Israel at 450 m above sea level and a latitude of 30Ã‚Â° 49' 30" N, and a longitude of 34Ã‚Â° 46' 0" E. The average rainfall is 100 to 200 mm per year with most of the rain falling during winter time. Adult heart shaped leaves were collected from trees in areas A, B, and C for the cDNA library during the summer seasons of 2000 to 2001. Material was also harvested from young in vitro plantlets of a clone (clone B2) derived from a single tree from area B. Samples for microarray analysis were taken from areas A, B, and C and from the Ein Avdat parking lot (area P, 1 km from the valley) on 27 November 2003, and for ion, isotope and metabolite profiling on 27 November 2003 and 13 October 2004. The parking lot trees were irrigated with non saline tap water for 24 hours once a week. For normalized control libraries, leaves, shoots and roots were harvested from 8 month old P. euphratica seedlings. Seeds were obtained from the Forest Administration Division, Xinjiang Corps of Production and Construction, Urumqi, PR China. The seeds were sown on sand that had a high content of clay (6%) and germinated at 12 hours light with 250 ÃŽÂ¼mol m-2 s-1 photosynthetically active radiation, 25Ã‚Â°C, and a relative air humidity of 60% in a climate chamber (Weiss, Giessen, Germany). The seedlings were potted into soil (Fruhstorfer Erde N, Archut, Germany), transferred to a greenhouse with natural light and watered daily with Long Ashton macronutrient solution [52]. For stress treatments, leaves and roots were harvested from P. euphratica subjected to the following treatments: elevated CO2 (plants submitted to an atmosphere of 700 ppm for 60 days); different irradiance levels (plants under three different irradiance regimes corresponding to 48%, 18% and 8% external irradiance) for 60 days; drought stress (plants submitted to a 21 day cycle of drought with 5% to 3% volumetric soil humidity) before harvesting; flooding stress (plants submitted during 21 days to a complete submergence of the root system); ozone (plants submitted to 200 nl l-1 of O3 for 7 and 20 h); cold and freezing (leaves harvested from plants acclimated at 5 days of +2Ã‚Â°C and from plants exposed to two and seven days of -2Ã‚Â°C following the acclimation period); salt stress (leaves and xylogenic cambium harvested from plants exposed to 150 mM NaCl for 0.5 h, 1 h, 1.5 h, 2 h, 5 h, 10 h, 24 h and 48 h and roots harvested after 40 minutes, 1.5 h, 8 h and 20 h); cadmium stress (plants were stressed with 50 ÃŽÂ¼M CdCl2 and roots harvested after 12, 24 and 48 h). Above text copied from Brosche et al. (2005) Genome Biology 6:R101 doi:10.1186/gb-2005-6-12-r101 PMID: 16356264
18	GPL6538	Alternative Mouse Exon 1.0 ST Array [CDF: MmEx10stv1_Mm_REFSEQ_8]	43,029	Karolinska Institutet	2008-02-28	Affymetrix	Mus musculus	GeneChip	in situ oligonucleotide, Alternative Mouse Exon 1.0 ST Array [CDF: MmEx10stv1_Mm_REFSEQ_8], Custom CDF linked to this submission as a supplementary file
19	GPL6528	Rat Oligo array V3.0.5 27648 spots	27,648	Karolinska Institute	2008-02-26	KTH Microarray Center	Rattus norvegicus	Oligo Array	spotted oligonucleotide, Rat Oligo array V3.0.5 27648 spots, Spotted 27K oligonucleotide microarrays. 70 mer gene specific oligonucleotide probes from Operon Rattus Norvegicus AROSv3.0.5
20	GPL6303	Angio Chip Microarray	16,896	Karolinska Institute	2007-12-20	AngioGenetics Sweden AB	Mus musculus	cDNA Array	spotted DNA/cDNA, Angio Chip Microarray, The Angio Chip is a high-density (16K) custom cDNA microarray

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