Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)
  Primates
(0)
  Rodents
(36)
  Mammals
(9)
  Vertebrates
(11)
  Invertebrates
(38)
  Plants
(54)
  Bacteria
(33)
  Viruses
(1)
  Phages
(0)
  Unclassified
(2)
  All
(258)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(3)
  GeneChip
(17)
  Tiling Array
(29)
  cDNA Array
(125)
  Oligo Array
(78)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(1)
  Other
(3)
  All
(258)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3832 tomato cDNA array (Ye lab) 10,368 Boyce Thompson Institute 2006-05-31 Ye lab Solanum lycopersicum
Solanum lycopersicum
cDNA Array spotted DNA/cDNA, tomato cDNA array (Ye lab),
2 GPL3644 WTSI Xenopus tropicalis 2.5K array v2.1.1 2,471 Wellcome Trust Sanger Institute 2006-04-10 WTSI Microarray facility Xenopus (Silurana) tropicalis
Xenopus tropicalis
Oligo Array spotted oligonucleotide, WTSI Xenopus tropicalis 2.5K array v2.1.1, GE Healthcare Codelink
3 GPL3709 Vysis GenoSensor CGH Array 300 287 Tel-Aviv Sourasky Medical Center 2006-04-28 Vysis/Abbott Laboratories Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Vysis GenoSensor CGH Array 300, The genomic array contains 287 targets, each spotted in triplicate. Permits the screening of pronto-oncogenes, tumor suppressor genes, microdeletion syndrome gene regions and subtelomeric regions. Clone verification has been accomplished by confirming each clone on the microarray with fluorescence in situ hybridization (FISH) mapping and PCR with gene specific primers.
4 GPL3887 CGH-SANGER 5K 2 10,080 Flanders Institute for Biotechnology (VIB) 2006-06-20 VIB MicroArray Facility, Leuven (Belgium) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-SANGER 5K 2, The array contains 5088 distinct BAC and PAC sequences at an average resolution of 1Mb. The bacs were printed in 2 replicates. 3490 BACS are from the Sanger institute. 1152 BACS were provided by K.U.Leuven Department CME (Belgium). and 96 BACS are from the Human 32K BAC rearray of CHORI BACPAC resources. The bacs were amplified by DOP - PCR. In total the array design contains 10080 features printed in a layout of 12 meta rows, 4 meta columns, 14 rows per block and 15 columns per block.
5 GPL3888 CGH-SANGER 3K 2 7,488 Flanders Institute for Biotechnology (VIB) 2006-06-20 VIB MicroArray Facility, Leuven (Belgium) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-SANGER 3K 2, The array contains 3492 distinct BAC and PAC sequences at an average resolution of 1Mb. The bacs were printed in 2 replicates. 3434 BACS are from the Sanger institute. 58 BACS were provided by K.U.Leuven Department CME (Belgium). The bacs were amplified by DOP - PCR. In total the array design contains 7488 features printed in a layout of 12 meta rows, 4 meta columns, 12 rows per block and 13 columns per block.
6 GPL3889 CGH-SANGER 3K 3 8,112 Flanders Institute for Biotechnology (VIB) 2006-06-20 VIB MicroArray Facility Leuven (Belgium) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-SANGER 3K 3, The array contains 3588 distinct BAC and PAC sequences at an average resolution of 1Mb. The bacs were printed in 2 replicates. 3530 BACS are from the Sanger institute. 58 BACS were provided by K.U.Leuven Department CME (Belgium). The bacs were amplified by DOP - PCR. In total the array design contains 8112 features printed in a layout of 12 meta rows, 4 meta columns, 13 rows per block and 13 columns per block.
7 GPL3893 CGH-SANGER 3K 5 7,744 Flanders Institute for Biotechnology (VIB) 2006-06-21 VIB MicroArray Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-SANGER 3K 5, The array contains 3696 distinct BAC and PAC sequences. The bacs were printed in 2 replicates. 3638 BACS are from the Sanger institute. 58 BACS were provided by K.U.Leuven Department CME (Belgium). The bacs were amplified by DOP - PCR. In total the array design contains 7744 features printed in a layout of 4 meta rows, 4 meta columns, 22 rows per block and 22 columns per block. This grid is printed twice on the glass slides allowing for two microarray assays per slide.
8 GPL3892 CGH-CHROM14 2K 1 3,840 Flanders Institute for Biotechnology (VIB) 2006-06-21 VIB MicroArray Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-CHROM14 2K 1, The array contains 1511 distinct BAC and PAC sequences.The bacs were printed in 2 replicates. 289 BACS are from the Sanger institute. 384 BACS were provided by K.U.Leuven Department CME (Belgium). 838 BACS from chromosome 14 are from the Human 32K BAC rearray of CHORI BACPAC resources. The bacs were amplified by DOP - PCR. In total the array design contains 3840 features printed in a layout of 12 meta rows, 4 meta columns, 8 rows per block and 10 columns per block.
9 GPL3894 CGH-CHROM14 2K 2 3,328 Flanders Institute for Biotechnology (VIB) 2006-06-21 VIB MicroArray Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CGH-CHROM14 2K 2, The array contains 1560 distinct BAC and PAC sequences. The bacs were printed in 2 replicates. 722 BACS are from the Sanger institute. 838 BACS from chromosome 14 are from the Human 32K BAC rearray of CHORI BACPAC resources. The bacs were amplified by DOP - PCR. In total the array design contains 3328 features printed in a layout of 4 meta rows, 4 meta columns, 13 rows per block and 16 columns per block. This grid is printed twice on the glass slides allowing for two microarray assays per slide.
10 GPL3771 VMSR Mus 20K 21,362 Vanderbilt University 2006-05-16 Vanderbilt Microarray Shared Resource Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, VMSR Mus 20K,
11 GPL3899 Vandy NIA Mouse 20k 20,319 Cincinnati Children's Hospital Medical Center 2006-06-22 Vanderbilt Microarray Shared Resource Mus musculus
Mus musculus
cDNA Array spotted DNA/cDNA, Vandy NIA Mouse 20k, Spotted NIA mouse 15K cDNA clones - This has clones from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others.
12 GPL3673 UNM Human Operon 18K version 3 slide 1 array format 18,432 University of New Mexico, School of Medicine 2006-04-14 University of New Mexico, School of Medicine EBL Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, UNM Human Operon 18K version 3 slide 1 array format,
13 GPL3800 population genetic approach to host patheogen response 18,432 University of New Mexico, School of Medicine 2006-05-24 University of New Mexico Experimental Biology Laboratory Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, population genetic approach to host patheogen response,
14 GPL3735 AURATUS: The goldfish environmental genomics project v1.0 19,200 UF 2006-05-08 University of Liverpool; Laboratory for Environmental Gene Regulation (LEGR); http://legr.liv.ac.uk/carpbase/index.htm Carassius auratus,Cyprinus carpio
Carassius auratus,Cyprinus carpio
cDNA Array spotted DNA/cDNA, AURATUS: The goldfish environmental genomics project v1.0,
15 GPL3924 Mouse 23K oligo microarray_CD133-Prominin Study 21,738 Texas A&M HSC 2006-06-26 University of Colorado, Gene Expression Core Laboratory, Dr Brian Soriano Mus musculus
Mus musculus
Oligo Array spotted oligonucleotide, Mouse 23K oligo microarray_CD133-Prominin Study, Custom-printed 23,000 feature mouse-oligonucleotide arrays, (provided by Dr. Brian Soriano, University of Colorado, Department of Pharmacology, Gene Expression Core Laboratory)
16 GPL3869 UCSF HUMAN 1.14 v3 2,454 CIMA/Universidad De Navarra 2006-06-12 University of California, San Francisco (UCSF) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UCSF HUMAN 1.14 v3, The arrays contain 2462 BAC clones printed as triplicated spots. The array was used for genome wide measurement of DNA copy number.
17 GPL3868 UCSF HUMAN 1.14 v2 2,445 CIMA/Universidad De Navarra 2006-06-12 University of California, San Francisco (UCSF) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UCSF HUMAN 1.14 v2, The arrays contain 2462 BAC clones printed as triplicated spots. The array was used for genome wide measurement of DNA copy number.
18 GPL3789 UCSF HUMAN 1.14 2,343 CIMA/Universidad De Navarra 2006-05-22 University of California, San Francisco (UCSF) Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UCSF HUMAN 1.14, The arrays contain 2462 BAC clones printed as triplicated spots. The array was used for genome wide measurement of DNA copy number.
19 GPL3961 Genomic Research Laboratory Rickettsia conorii 0.7 k 768 Genomic Research Laboratory 2006-06-30 Unité des Rickettsies, CNRS-UMR6020, IFR48, Faculté de Médecine, 27, Bd Jean Moulin, Marseille, France Rickettsia conorii
Rickettsia conorii
cDNA Array spotted DNA/cDNA, Genomic Research Laboratory Rickettsia conorii 0.7 k,
20 GPL3639 UHNMAC Human 19K v7 19,200 Vaccine and Gene Therapy Institute 2006-04-06 UHN Microarray Centre Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UHNMAC Human 19K v7, This set includes 19200 cDNA clones from the IMAGE consortium, single spotted array containing 19,008 characterized and unknown human ESTs. The clone set has been sequence-verified at the Microarray Centre and the sequences can be downloaded for validation."
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