Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(0)
  Primates
(0)
  Rodents
(0)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(1)
  Bacteria
(0)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(1)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(1)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(1)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16106 Affymetrix Rice Genome Array [custom affyricechipalt.cdf] 23,945 International Rice Research Institute 2012-09-26 Affymetrix Oryza sativa
Oryza sativa
GeneChip in situ oligonucleotide, Affymetrix Rice Genome Array [custom affyricechipalt.cdf], The custom CDF was built using affyprobe miner software (http://www.ncbi.nlm.nih.gov/pubmed/17660211, available http://discover.nci.nih.gov/affyprobeminer/). Probes were mapped to NCBI rice transcript ccds sequences, requiring perfect matches and a minimum of 5 probes per transcript.