Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(102)
  Primates
(0)
  Rodents
(48)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(65)
  Bacteria
(39)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(289)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(37)
  cDNA Array
(114)
  Oligo Array
(91)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(289)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6247 [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version] 29,215 Affymetrix, Inc. 2007-12-05 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 16:20:04 2009 PDT #%chip_type=RaGene-1_0-st-v1 #%lib_set_name=RaGene-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
2 GPL6194 [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version] 1,064,901 Affymetrix, Inc. 2007-11-30 Affymetrix Rattus norvegicus
Rattus norvegicus
GeneChip in situ oligonucleotide, [RaEx-1_0-st] Affymetrix Rat Exon 1.0 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Mon Mar 16 20:01:52 2009 PDT #%chip_type=RaEx-1_0-st-v1 #%lib_set_name=RaEx-1_0-st #%lib_set_version=v1 #%genome-species=Rattus norvegicus #%genome-version=rn4 #%genome-version-ucsc=rn4 #%genome-version-ncbi=HGSC v3.4 #%genome-version-create_date=2004-11 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
3 GPL6246 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version] 35,557 Affymetrix, Inc. 2007-12-05 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 16:16:04 2009 PDT #%chip_type=MoGene-1_0-st-v1 #%lib_set_name=MoGene-1_0-st #%lib_set_version=v1 #%genome-species=Mus musculus #%genome-version=mm9 #%genome-version-ucsc=mm9 #%genome-version-ncbi=37 #%genome-version-create_date=2007-07 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
4 GPL6096 [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version] 283,952 Affymetrix, Inc. 2007-11-08 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 17:52:08 2009 PDT #%chip_type=MoEx-1_0-st-v1 #%lib_set_name=MoEx-1_0-st #%lib_set_version=v1 #%genome-species=Mus musculus #%genome-version=mm9 #%genome-version-ucsc=mm9 #%genome-version-ncbi=37 #%genome-version-create_date=2007-07 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
5 GPL6193 [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version] 1,256,831 Affymetrix, Inc. 2007-11-30 Affymetrix Mus musculus
Mus musculus
GeneChip in situ oligonucleotide, [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 17:52:51 2009 PDT #%chip_type=MoEx-1_0-st-v1 #%lib_set_name=MoEx-1_0-st #%lib_set_version=v1 #%genome-species=Mus musculus #%genome-version=mm9 #%genome-version-ucsc=mm9 #%genome-version-ncbi=37 #%genome-version-create_date=2007-07 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
6 GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] 33,297 Affymetrix, Inc. 2007-12-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 16:01:33 2009 PDT #%chip_type=HuGene-1_0-st-v1 #%lib_set_name=HuGene-1_0-st #%lib_set_version=v1 #%genome-species=Homo sapiens #%genome-version=hg18 #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28
7 GPL6169 [Hs35b_M14R] Affymetrix Human Tiling 1.0R Set, Array 14 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M14R] Affymetrix Human Tiling 1.0R Set, Array 14, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
8 GPL6168 [Hs35b_M13R] Affymetrix Human Tiling 1.0R Set, Array 13 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M13R] Affymetrix Human Tiling 1.0R Set, Array 13, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
9 GPL6167 [Hs35b_M12R] Affymetrix Human Tiling 1.0R Set, Array 12 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M12R] Affymetrix Human Tiling 1.0R Set, Array 12, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
10 GPL6166 [Hs35b_M11R] Affymetrix Human Tiling 1.0R Set, Array 11 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M11R] Affymetrix Human Tiling 1.0R Set, Array 11, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
11 GPL6165 [Hs35b_M10R] Affymetrix Human Tiling 1.0R Set, Array 10 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M10R] Affymetrix Human Tiling 1.0R Set, Array 10, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
12 GPL6164 [Hs35b_M09R] Affymetrix Human Tiling 1.0R Set, Array 9 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M09R] Affymetrix Human Tiling 1.0R Set, Array 9, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
13 GPL6163 [Hs35b_M08R] Affymetrix Human Tiling 1.0R Set, Array 8 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M08R] Affymetrix Human Tiling 1.0R Set, Array 8, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
14 GPL6162 [Hs35b_M07R] Affymetrix Human Tiling 1.0R Set, Array 7 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M07R] Affymetrix Human Tiling 1.0R Set, Array 7, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
15 GPL6161 [Hs35b_M06R] Affymetrix Human Tiling 1.0R Set, Array 6 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M06R] Affymetrix Human Tiling 1.0R Set, Array 6, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
16 GPL6160 [Hs35b_M05R] Affymetrix Human Tiling 1.0R Set, Array 5 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M05R] Affymetrix Human Tiling 1.0R Set, Array 5, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
17 GPL6159 [Hs35b_M04R] Affymetrix Human Tiling 1.0R Set, Array 4 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M04R] Affymetrix Human Tiling 1.0R Set, Array 4, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
18 GPL6158 [Hs35b_M03R] Affymetrix Human Tiling 1.0R Set, Array 3 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M03R] Affymetrix Human Tiling 1.0R Set, Array 3, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
19 GPL6157 [Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
20 GPL6156 [Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1 0 Affymetrix, Inc. 2007-11-20 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, [Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Tiling 1.0R Array Set is designed for transcript mapping experiments. This 14-array set contains approximately 45 million oligonucleotide probes to interrogate the human genome. Each array in the set contains over 3.25 million Perfect Match/Mismatch probe pairs to specifically interrogate genomic regions. Sequences used in the design of the Human Tiling 1.0R Array Set were selected from NCBI human genome assembly (Build 34). Repetitive elements were removed by RepeatMasker. Probes are tiled at an average resolution of 35 bp, as measured from the central position of adjacent 25-mer oligos, leaving a gap of approximately 10 bp between probes. BPMAP and other files can be downloaded from the Affymetrix Web site below.
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