Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(205)		   Primates
(0)		   Rodents
(86)		   Mammals
(8)		   Vertebrates
(9)		   Invertebrates
(17)		   Plants
(67)		   Bacteria
(37)		   Viruses
(0)		   Phages
(0)		   Unclassified
(4)		   All
(433)		  
  SAGE NlaIII
(2)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(2)		   GeneChip
(106)		   Tiling Array
(12)		   cDNA Array
(36)		   Oligo Array
(161)		   Bead Array
(80)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(34)		   Other
(0)		   All
(433)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Xenopus cDNA microarray identification of genes with endodermal organ expression (GSE7129) [cDNA Array] Xenopus 21.5k cDNA microarray set2 (GPL1861) POSTECH 2007-02-26 Xenopus laevis
Xenopus laevis		 64,512
(21,504 x 3) 		3 by_platform
by_series
2 Vibrio vulnificus: Wild-type vs. smcR mutant (V. vulnificus quorum sensing master regulator) (GSE32212) [Oligo Array] Vibrio vulnificus whole genome TwinChip (GPL14588) Seoul National University 2011-09-19 Vibrio vulnificus
Vibrio vulnificus		 24,138
(4,023 x 6) 		6 by_platform
by_series
3 Vibrio vulnificus: Wild type vs. iscR mutant (V. vulnificus iron-sulfur cluster regulator) (GSE44679) [Oligo Array] Vibrio vulnificus whole genome TwinChip (GPL16723) Seoul National University 2013-02-26 Vibrio vulnificus
Vibrio vulnificus		 21,012
(3,502 x 6) 		6 by_platform
by_series
4 Vibrio vulnificus Wild-type vs. smcR mutant biofilm cells (V. vulnificus quorum sensing master regulator) (GSE32270) [Oligo Array] Vibrio vulnificus MO6-24/O whole genome TwinChip (GPL14598) Seoul National University 2011-09-21 Vibrio vulnificus
Vibrio vulnificus		 13,632
(4,544 x 3) 		3 by_platform
by_series
5 Expression analysis of Salmonella enterica serovar Typhimurium UK1 delta-iacP mutant (GSE34663) [Oligo Array] Nimblegen Salmonella Typhimurium LT2 4.5K [081014_Styp_LT2_EXP] (GPL15054) Korea University 2011-12-22 unidentified
unidentified		 18,016
(4,504 x 4) 		4 by_platform
by_series
6 Transciptome analysis of Salmonella enterica serovar Typhimurium UK1 delta-raoN at oxidative stress (GSE37626) [Oligo Array] Nimblegen Salmonella Typhimurium LT2 4.5K [081014_Styp_LT2_EXP] (GPL15054) Korea University 2012-04-27 unidentified
unidentified		 18,016
(4,504 x 4) 		4 by_platform
by_series
7 Effects of dietary fat types on growth performance, pork quality, and gene expression in growing-finishing pigs (GSE38146) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) National Institute of Animal Science 2012-05-22 Sus scrofa
Sus scrofa domestica		 578,952
(24,123 x 24) 		24 by_platform
by_series
8 Comparison between skeletal transcriptomes of Korean native pig and Yorkshire (GSE18653) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Korea University 2009-10-20 Sus scrofa
Sus scrofa domestica		 192,984
(24,123 x 8) 		8 by_platform
by_series
9 Comparison between liver transcriptomes of Korean native pig and Yorkshire (GSE21408) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Korea University 2010-04-20 Sus scrofa
Sus scrofa domestica		 192,984
(24,123 x 8) 		8 by_platform
by_series
10 KNP_vs_YS_Fat (GSE9333) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Korea University 2007-10-16 Sus scrofa
Sus scrofa domestica		 192,984
(24,123 x 8) 		8 by_platform
by_series
11 Expression data from porcine embryonic stem cells (GSE32506) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Seoul National University 2011-09-30 Sus scrofa
Sus scrofa domestica		 72,369
(24,123 x 3) 		3 by_platform
by_series
12 Differential gene expression profile of Streptococcus pneumoniae early biofilm cells and planktonic cells (GSE34751) [Oligo Array] MYcroarray CAT-3x15K-Streptococcus_pneumoniae_R6 (GPL15071) Dongguk University Medical center 2011-12-28 Streptococcus pneumoniae R6
Streptococcus pneumoniae R6		 6,075
(2,025 x 3) 		3 by_platform
by_series
13 Expression analysis of strains Streptococcus pneumoniae KCTC 5080T, Streptococcus mitis KCTC 3556T, Streptococcus oralis KCTC 13048T, and Streptococcus pseudopneumoniae CCUG 49455T (GSE37539) [Oligo Array] Streptococcus pneumoniae whole genome expression array (GPL15485) Chung-Ang University College of Medicine 2012-04-24 Streptococcus oralis
Streptococcus oralis		 6,892
(1,723 x 4) 		1 3 by_platform
by_series
14 Genomic and Transcriptomic Analysis of NaCl-Tolerant Staphylococcus sp. OJ82 from Fermented Seafood (GSE42992) [HT Sequencing] Illumina Genome Analyzer IIx (Staphylococcus sp. OJ82) (GPL16392) Korea university 2012-12-18 Staphylococcus,unidentified
Staphylococcus,unidentified		 2
(0 x 2) 		2 by_platform
by_series
15 Expression data from clinical S. aureus strains (GSE44268) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) AmorePacific Co. 2013-02-12 Staphylococcus aureus
Staphylococcus aureus		 62,200
(7,775 x 8) 		8 by_platform
by_series
16 Expression data from Staphylococcus aureus ATCC 25923 (antibiotic sensitive) and ATCC 33591 (MRSA) (GSE18289) [GeneChip] [S_aureus] Affymetrix S. aureus Genome Array (GPL1339) SNU 2009-09-25 Staphylococcus aureus
Staphylococcus aureus		 46,650
(7,775 x 6) 		6 by_platform
by_series
17 Antisense Transcripts in Mutant Strains (GSE37697) [Tiling Array] Agilent 034318 Schizosaccharomyces pombe 44K (GPL15529) Korea Advanced Institute of Science and Technology 2012-05-01 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 180,876
(45,219 x 4) 		4 by_platform
by_series
18 Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin (GSE40453) [Tiling Array] Agilent 034318 Schizosaccharomyces pombe 44K (GPL15529) Korea Advanced Institute of Science and Technology 2012-08-29 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 180,876
(45,219 x 4) 		4 by_platform
by_series
19 Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin [MNase-Seq] (GSE40451) [HT Sequencing] Illumina HiSeq 2000 (Schizosaccharomyces pombe) (GPL13988) Korea Advanced Institute of Science and Technology 2012-08-29 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 6
(0 x 6) 		6 by_platform
by_series
20 Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin (GSE40453) [HT Sequencing] Illumina HiSeq 2000 (Schizosaccharomyces pombe) (GPL13988) Korea Advanced Institute of Science and Technology 2012-08-29 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 6
(0 x 6) 		6 by_platform
by_series
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