Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(83)		   SAGE RsaI
(1)		   SAGE Sau3A
(5)		   MPSS
(17)		   GeneChip
(677)		   Tiling Array
(1,257)		   cDNA Array
(2,714)		   Oligo Array
(5,069)		   Bead Array
(183)		   Protein Array
(1)		   Antibody
(22)		   RT-PCR
(144)		   HT-Seq
(1,218)		   Other
(129)		   All
(11,528)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14623 Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0 45,220 zoological institute Kiel 2011-09-26 Agilent Technologies Hydra vulgaris
Hydra vulgaris		 Oligo Array in situ oligonucleotide, Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0, Hydra vulgaris (AEP) Arrays of this design have barcodes that begin with 16029288 or 2529288. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
2 GPL10550 Ion Channel specific Human Oligo Array 99 ZMNH 2010-06-16 self-made Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Ion Channel specific Human Oligo Array,
3 GPL6124 Deinococcus radiodurans 6K cDNA microarray (NC_001263, NC_001264, NC_000958, NC_000959) 6,912 Zhejiang University 2007-11-13 The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University Deinococcus radiodurans
Deinococcus radiodurans		 cDNA Array spotted DNA/cDNA, Deinococcus radiodurans 6K cDNA microarray (NC_001263, NC_001264, NC_000958, NC_000959),
4 GPL9466 Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version] 3,166 Zhejiang University 2009-10-20 The Bioinformatics and Molecular Regulation Laboratory, Zhejiang University Deinococcus radiodurans
Deinococcus radiodurans		 Oligo Array spotted oligonucleotide, Institute of Nuclear-Agricultural Sciences Deinococcus radiodurans 3166 array [condensed version],
5 GPL9301 Zhejiang university human 449 oligonucleotide array 1,347 Zhejiang University 2009-09-28 Bioinformatics and Gene Network Research Group, Zhejiang university Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Zhejiang university human 449 oligonucleotide array, Preparation of microarray: 449 immune related genes were included. Specific 70mer oligonucleotides of each gene was searched in the human_V4.0.1_genelist_s+ (Qiagen-Operon).Another 10 housekeeping genes were also included. Oligos (1OD) were dissolved in 100 ul ddH2O and printed on Immobilon-Ny+ Transfer T Membranes (Millipore, Bedford, MA, USA) using GeneTAC M G3 arrayer (Genomic Solutions, Ann Arbor, MI, USA). Each oligo was duplicated triple in each array to verify the reproducibility of experiments. Preparation of labeled cDNA probe: The RNA samples were labeled with 33P-dCTP during the first-strand reverse transcription reactions. The labeling reaction contained 20mmol/L each of dATP, dTTP and dGTP, 10mmol/L dCTP and 3ul of alpha-33P-dCTP (10mCi/ml, Amersham Biosciences, Buckinghamshire, UK), 10ul of First-Strand Buffer, 0.5mmol/L DTT and 400 unit SuperScriptTM II RNase H- Reverse Transcriptase (Invitrogen, Carlsbad, CA, USA), 0.3 ug oligo(dT)16 primer, 0.1 ug random hexamer primer and total RNA at the optimal concentration in a reaction volume of 50 ul. The reaction proceeded at 42C for 2 hours and products were purified using a G-50 column (Amersham Pharmacia Biotech, Piscataway, NJ, USA).
6 GPL13391 SuperArray Oligo GEArray® Notch Signaling Pathway oligoarray Array 125 Zhejiang University 2011-04-08 SuperArray Bioscience Corporation Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, SuperArray Oligo GEArray® Notch Signaling Pathway oligoarray Array,
7 GPL15392 Agilent-035654 Canine_murine miRNAv17 62,976 Zentrum für klinische Tiermedizin 2012-04-02 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-035654 Canine_murine miRNAv17, Canine and murine miRNAs Agilent miRBase v17 Arrays of this design have barcodes that begin with 16035654 or 2535654. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
8 GPL16046 C. elegans 12 x 135K Gene Expression Array 15,405 Yunnan University 2012-09-12 NimbleGen Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, C. elegans 12 x 135K Gene Expression Array, NimbleGen 12x135K microarrays for gene expression analysis enable you to conveniently and simultaneously hybridize 12 samples on each slide.
9 GPL8638 Duke Cryptococcus neoformans serotype D (JEC21) 8K 8,448 Yonsei University 2009-06-03 Duke University Cryptococcus neoformans var. neoformans JEC21
Cryptococcus neoformans var. neoformans JEC21		 Oligo Array spotted oligonucleotide, Duke Cryptococcus neoformans serotype D (JEC21) 8K,
10 GPL6678 Yonsei University Drosophila-6k-twin-microarray version 1 6,112 Yonsei University 2008-04-03 Digital Genomics (Seoul, Korea). Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, Yonsei University Drosophila-6k-twin-microarray version 1,
11 GPL15868 Genomic Tree-Yonsei Cancer Center Human 23K Array 22,740 Yonsei Cancer Center 2012-07-30 Genomic Tree Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Genomic Tree-Yonsei Cancer Center Human 23K Array,
12 GPL6525 Mouse NCI/ATC Mm-CGEN2.0 22k oligo array 21,921 Yokohama City University School of Medicine 2008-02-25 Advanced Technology Center Microarray Facility (NIH/NCI/CCR/ATC) Mus musculus
Mus musculus		 Oligo Array spotted oligonucleotide, Mouse NCI/ATC Mm-CGEN2.0 22k oligo array,
13 GPL6340 YCU Human 4.2K version 1 4,234 Yokohama City University 2008-01-04 Department of Human Genetics, Yokohama City University Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, YCU Human 4.2K version 1,
14 GPL6870 YZU_E.Coli_152_V1.0 504 Yanzhou university 2008-05-17 CapitalBio Corp. Beijing, China Escherichia coli
Escherichia coli		 cDNA Array spotted DNA/cDNA, YZU_E.Coli_152_V1.0,
15 GPL10538 Macrogen Human BAC clone 4K array 4,096 Yamaguchi University 2010-06-14 Macrogen Co., Korea Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Macrogen Human BAC clone 4K array, BAC clone Chip Platform table annotations based on NCBI build 36
16 GPL5922 PIWI-associated piRNA in Drosophila melanogaster ovary 13,299 Yale University Stem Cell Center 2007-09-23 Drosophila melanogaster
Drosophila melanogaster		 Other other, PIWI-associated piRNA in Drosophila melanogaster ovary,
17 GPL1773 LIMA_SlideA 30,000 Yale University School of Medicine 2005-01-03 Oryza sativa
Oryza sativa		 MIXTURE spotted oligonucleotide, LIMA_SlideA, Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideA of the two slide sets. Platform_catalog_number: XDEN-A Platform_coating: poly L lysine Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing Platform_manufacturer: Keck Biotechnology Resource Lab at Yale Platform_support: glass slide Platform_technology: spotted oligonucleotide
18 GPL1774 LIMA_SlideB 30,000 Yale University School of Medicine 2005-01-03 Oryza sativa
Oryza sativa		 MIXTURE spotted oligonucleotide, LIMA_SlideB, Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideB of the two slide sets. Platform_catalog_number: XDEN-A Platform_coating: poly L lysine Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing Platform_manufacturer: Keck Biotechnology Resource Lab at Yale Platform_support: glass slide Platform_technology: spotted oligonucleotide
19 GPL988 OAR27K 27,648 Yale University School of Medicine 2004-02-12 Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array spotted oligonucleotide, OAR27K, Arabidopsis OAR27K array is created from a set of 27K Operon 70 mer oligos. The array has a 48 pin conformation with 24 columns and 24 rows in each of 4 x 12 subarrays.
20 GPL4693 OHU28K-OI-072404-YMD.gal 27,175 Yale University School of Medicine 2006-12-21 Keck Microarray Resource at Yale Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, OHU28K-OI-072404-YMD.gal, A set of 28K Operon Version 2.1 and Version 2.1 upgrade -70 mer oligos. It has 48 pins with 24 columns and 25 rows in each subarrays. ID is Operon ID#.
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